YRC Public Data Repository - Protein Structure Prediction

Protein:	RAD17
Organism:	Saccharomyces cerevisiae
Length:	401 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD17.

Description	E-value	Query Range	Subject Range
gi\|23295773, gi\|... - gi\|30060009\|gb\|AAP13341.1\| PCNA-like DNA checkpoint protein Rad1 [Xenopus laevis], gi\|23295773\|gb\|AA...	364.0	[0..15]	[282..17]
gi\|109076916 - gi\|109076916\|ref\|XP_001090119.1\| PREDICTED: similar to RAD1 homolog isoform 1 isoform 1 [Macaca mula...	362.0	[0..16]	[284..19]
gi\|3289000 - gi\|3289000\|gb\|AAC95466.1\| RAD1 [Homo sapiens]	361.0	[0..16]	[284..19]
gi\|30584875, gi\|... - gi\|61371395\|gb\|AAX43660.1\| RAD1-like [synthetic construct], gi\|61371391\|gb\|AAX43659.1\| RAD1-like [sy...	361.0	[0..16]	[284..19]
gi\|76644206 - gi\|76644206\|ref\|XP_596695.2\| PREDICTED: similar to RAD1 homolog isoform 1 [Bos taurus]	360.0	[0..16]	[284..18]
gi\|163915412, gi... - gi\|62859563\|ref\|NP_001016045.1\| RAD1 homolog [Xenopus (Silurana) tropicalis], gi\|163915412\|gb\|AAI572...	359.0	[0..15]	[282..17]
gi\|109466186, gi... - ref\|XP_215497.2\| similar to Rad1p [Rattus norvegicus], gi\|157823269\|ref\|NP_001099889.1\| RAD1 homolog...	356.0	[0..16]	[284..19]
gi\|73953864 - gi\|73953864\|ref\|XP_536505.2\| PREDICTED: similar to RAD1 homolog isoform 1 isoform 1 [Canis familiari...	355.0	[0..16]	[282..18]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRINSELANK FSASTVHLEH ITTALSCLTP FGSKDDVLIF IDADGLSFVR ENNHVIKIQL  60
   61 LLSRELFMSY SYRNETEDHM KLCVKINHIL DSVSVMNRNS DDIVECTLSY DGHGSPFVLI 120
  121 FEDSFISERV EYSTYLIKDF DTNGLELD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1ge8A
Description:	Prolifirating cell nuclear antigen (PCNA)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [149-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RERISFEAII KGEALHSALK DLKEIGCKEC YVYAKTEAND ENVFALISKS QLGFSKIKLP  60
   61 SNRSILEKLQ VFDGDSTTVI DGFAVIGFFD FTSFDKIRKS TKIASKVLFR MDVHGVLSVN 120
  121 ILSQTDDVII TDTTRPSNNR PGSIRQLQLP KDYPGIVIEV CMLEKESIDE AAQTEIELLM 180
  181 ETNELG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1ge8A
Description:	Prolifirating cell nuclear antigen (PCNA)
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [335-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRNSFKKSTI RKRYGTDKGN ETSNDNLLQL NGKKIKLPSE EENNKNRESE DEENHCKYPT  60
   61 KDIPIFF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits