| Protein: | RAD17 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 401 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD17.
| Description | E-value | Query Range |
Subject Range |
|
|
364.0 | [0..15] | [282..17] |
|
|
362.0 | [0..16] | [284..19] |
|
|
361.0 | [0..16] | [284..19] |
|
|
361.0 | [0..16] | [284..19] |
|
|
360.0 | [0..16] | [284..18] |
|
|
359.0 | [0..15] | [282..17] |
|
|
356.0 | [0..16] | [284..19] |
|
|
355.0 | [0..16] | [282..18] |
|
Region A: Residues: [1-148] |
1 11 21 31 41 51
| | | | | |
1 MRINSELANK FSASTVHLEH ITTALSCLTP FGSKDDVLIF IDADGLSFVR ENNHVIKIQL 60
61 LLSRELFMSY SYRNETEDHM KLCVKINHIL DSVSVMNRNS DDIVECTLSY DGHGSPFVLI 120
121 FEDSFISERV EYSTYLIKDF DTNGLELD
|
| Detection Method: |  |
| Confidence: | 4.0 |
| Match: | 1ge8A |
| Description: | Prolifirating cell nuclear antigen (PCNA) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [149-334] |
1 11 21 31 41 51
| | | | | |
1 RERISFEAII KGEALHSALK DLKEIGCKEC YVYAKTEAND ENVFALISKS QLGFSKIKLP 60
61 SNRSILEKLQ VFDGDSTTVI DGFAVIGFFD FTSFDKIRKS TKIASKVLFR MDVHGVLSVN 120
121 ILSQTDDVII TDTTRPSNNR PGSIRQLQLP KDYPGIVIEV CMLEKESIDE AAQTEIELLM 180
181 ETNELG
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1ge8A |
| Description: | Prolifirating cell nuclear antigen (PCNA) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [335-401] |
1 11 21 31 41 51
| | | | | |
1 NRNSFKKSTI RKRYGTDKGN ETSNDNLLQL NGKKIKLPSE EENNKNRESE DEENHCKYPT 60
61 KDIPIFF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.350 | a.39.1 | EF-hand |
| View | Download | 0.347 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.347 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.309 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.297 | b.43.3 | Translation proteins |
| View | Download | 0.294 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.284 | g.41.10 | Zn-finger domain of Sec23/24 |
| View | Download | 0.278 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.271 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.270 | g.41.10 | Zn-finger domain of Sec23/24 |
