| Protein: | PDE2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 526 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDE2.
| Description | E-value | Query Range |
Subject Range |
|
|
569.0 | [0..1] | [526..1] |
|
|
494.0 | [0..98] | [526..297] |
|
|
494.0 | [0..98] | [526..396] |
|
|
484.0 | [0..98] | [526..321] |
|
|
483.0 | [0..98] | [522..213] |
|
|
483.0 | [0..98] | [525..220] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MSTLFLIGIH EIEKSQTIVQ NEHYFDRVIE LQDLDSLMVA LYKDRVSPFP NVHNFETGVS 60
61 IVLYDPSKFQ LSVRQLDVLF KRFFPSFNIS AIDHTREENL QRLECVEREN SICRNRITRI 120
121 NHWMYHHHDD TPD
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.597 | a.4.1 | Homeodomain-like |
| View | Download | 0.556 | d.192.1 | YlxR-like |
| View | Download | 0.538 | d.192.1 | YlxR-like |
| View | Download | 0.512 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.501 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.495 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.495 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.473 | a.74.1 | Cyclin-like |
|
Region A: Residues: [134-370] |
1 11 21 31 41 51
| | | | | |
1 GINKNSYGTV NGNSVPTQAC EANIYTLLLH LNDSKAQHLR KASVPRLIRN IEFMSFLSDP 60
61 IEKISQEGSH YWNILSTWDF CALSLSTQEL IWCGFTLIKK LSKDAKVLIA DNKLLLLLFT 120
121 LESSYHQVNK FHNFRHAIDV MQATWRLCTY LLKDNPVQTL LLCMAAIGHD VGHPGTNNQL 180
181 LCNCESEVAQ NFKNVSILEN FHRELFQQLL SEHWPQLLSI SKKKFDFISE AILATDM
|
| Detection Method: | |
| Confidence: | 236.0103 |
| Match: | 1oynA |
| Description: | Catalytic domain of cyclic nucleotide phosphodiesterase pde4d |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [371-526] |
1 11 21 31 41 51
| | | | | |
1 ALHSQYEDRL MHENPMKQIT LISLIIKAAD ISNVTRTLSI SARWAYLITL EFNDCALLET 60
61 FHKAHRPEQD CFGDSYKNVD SPKEDLESIQ NILVNVTDPD DIIKDHPHIP NGQIFFINTF 120
121 AEVFFNALSQ KFSGLKFLSD NVKINKEYWM KHKKPQ
|
| Detection Method: | |
| Confidence: | 236.0103 |
| Match: | 1oynA |
| Description: | Catalytic domain of cyclic nucleotide phosphodiesterase pde4d |
| Matching Structure (courtesy of the PDB): |
|
