| Protein: | VTS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 523 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VTS1.
| Description | E-value | Query Range |
Subject Range |
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1.0E-56 | [136..462] | [2072..2393] |
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8.0E-55 | [136..462] | [2074..2388] |
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6.0E-54 | [1..523] | [1..523] |
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5.0E-51 | [122..473] | [1961..2281] |
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4.0E-45 | [158..406] | [1429..1689] |
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1.0E-43 | [101..421] | [1414..1743] |
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8.0E-43 | [122..458] | [1498..1868] |
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3.0E-42 | [122..458] | [1420..1790] |
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6.0E-42 | [298..519] | [168..396] |
|
Region A: Residues: [1-416] |
1 11 21 31 41 51
| | | | | |
1 MKHPYEEFPT GSKSPYNMSR GAHPGAVLLS PQSSAINKNN PGSNSGNNQG NSSVTANVLS 60
61 PQSHSMSLND MLDQQSFMLD TAGTRAQPLQ QQQQQQQQQQ QASLPSLNIQ TVSSTAAGSA 120
121 IVSPMMQSPK ALQSTLSSTS MYLDSFQRSP NNILGIPSQS GSIPLPQSRQ SQQQSQSQKN 180
181 DPNMGTNFSQ DINQLCSWIS MLNSSQQNTV MDNILSILND DVLKYTKLKI ETLTNTPFIS 240
241 PPLPAIASPI PNRDDTQILN IDSVFSSSPI TNDPENTDNL LYQNWSPQPH SIPISQPIYD 300
301 NITDASQRSK SAEPHVNSSP NLIPVQKQFN NGNSTKYKKL PSENPNYLSH SLSSSHSFFQ 360
361 PKKRSNMGNE YNSHHHHSLH HPLHNTTSYF SNTSRPSGTD LNKSNQNVFN NTITHP
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [417-523] |
1 11 21 31 41 51
| | | | | |
1 NAGPTSATST STSSNGNTPL SSNSSMNPKS LTDPKLLKNI PMWLKSLRLH KYSDALSGTP 60
61 WIELIYLDDE TLEKKGVLAL GARRKLLKAF GIVIDYKERD LIDRSAY
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.730 | 0.131 | protein targeting to vacuole | a.60.1 | SAM/Pointed domain |
| View | Download | 0.564 | 0.023 | protein targeting to vacuole | c.53.1 | Resolvase-like |
| View | Download | 0.619 | N/A | N/A | a.60.1 | SAM/Pointed domain |
| View | Download | 0.558 | N/A | N/A | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.548 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.534 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.498 | N/A | N/A | a.60.2 | RuvA domain 2-like |
| View | Download | 0.496 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.479 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.462 | N/A | N/A | a.60.1 | SAM/Pointed domain |
| View | Download | 0.445 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.380 | N/A | N/A | a.60.8 | HRDC-like |
| View | Download | 0.355 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.332 | N/A | N/A | a.96.1 | DNA-glycosylase |
| View | Download | 0.324 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.323 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.318 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.308 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.285 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.266 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.261 | N/A | N/A | d.41.2 | Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain |
| View | Download | 0.256 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.254 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.246 | N/A | N/A | d.38.1 | Thioesterase/thiol ester dehydrase-isomerase |
| View | Download | 0.245 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.241 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.240 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.238 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.237 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.234 | N/A | N/A | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.228 | N/A | N/A | a.96.1 | DNA-glycosylase |
| View | Download | 0.224 | N/A | N/A | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.221 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.214 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.214 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.208 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.205 | N/A | N/A | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.201 | N/A | N/A | d.232.1 | Mago nashi protein |
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Region A: Residues: [309-407] |
1 11 21 31 41 51
| | | | | |
1 SKSAEPHVNS SPNLIPVQKQ FNNGNSTKYK KLPSENPNYL SHSLSSSHSF FQPKKRSNMG 60
61 NEYNSHHHHS LHHPLHNTTS YFSNTSRPSG TDLNKSNQN
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
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Region A: Residues: [408-523] |
1 11 21 31 41 51
| | | | | |
1 VFNNTITHPN AGPTSATSTS TSSNGNTPLS SNSSMNPKSL TDPKLLKNIP MWLKSLRLHK 60
61 YSDALSGTPW IELIYLDDET LEKKGVLALG ARRKLLKAFG IVIDYKERDL IDRSAY
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| Detection Method: | |
| Confidence: | 28.0 |
| Match: | 2b6gA |
| Description: | RNA recognition by the Vts1 SAM domain |
Matching Structure (courtesy of the PDB): |
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