YRC Public Data Repository - Protein Structure Prediction

Protein:	GDS1
Organism:	Saccharomyces cerevisiae
Length:	522 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GDS1.

Description	E-value	Query Range	Subject Range
unc-89 - status:Partially_confirmed UniProt:O01761 protein_id:AAP68958.1	358.0	[0..68]	[483..1466]
gi\|27469321, gi\|... - gi\|27469321\|ref\|NP_765958.1\| glycerol ester hydrolase [Staphylococcus epidermidis ATCC 12228], gi\|27...	197.0	[0..216]	[473..26]
gi\|57865971, gi\|... - gi\|57865971\|ref\|YP_187618.1\| lipase, putative [Staphylococcus epidermidis RP62A], gi\|57636629\|gb\|AAW...	195.0	[0..217]	[473..27]
gi\|44983103, gi\|... - gi\|45188259\|ref\|NP_984482.1\| ADR386Wp [Ashbya gossypii ATCC 10895], gi\|44983103\|gb\|AAS52306.1\| ADR38... gi\|44983103 - gi\|44983103\|gb\|AAS52306.1\| ADR386Wp [Ashbya gossypii ATCC 10895]	190.0	[0..1]	[308..1]
gi\|242373271, gi... - gi\|242373271\|ref\|ZP_04818845.1\| autolysin [Staphylococcus epidermidis M23864:W1], gi\|242348981\|gb\|EE... gi\|13272276 - gi\|13272276\|gb\|AAK17065.1\| fibronectin binding autolysin [Staphylococcus caprae]	189.0	[0..185]	[498..1]
gi\|19913101 - gi\|19913101\|emb\|CAC83649.1\| putative autolysin [Staphylococcus cohnii]	187.0	[0..221]	[516..92]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALANSRPLQ IPTLENEILH NSNSPVFQLN SMGFTTRADT ISNPGTDLIG NQPGMALDDN  60
   61 NLAGSSFSSS QEIKATKPKK DFGAPKKDNP LLEISKLIPV TGERPKPENR DSPLDDDVLH 120
  121 AVFLILWEM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [130-522]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPNQQGMTVK QLCDLLLQKH PDMSNLSTKL SNLISAKLNA YVKKIEKGEK TLTYALSREW  60
   61 SNSSPRRMLY IYRGILSPDY KEHAQAVTMQ LKQQLETSGD TSDFNSNGKK KRESSSNQLV 120
  121 NNDSYSSSMT DMKNMSSNSS FSKNLNVGNL AFSLSPEFNI PYSTSPVSLN LSPSMSNNQQ 180
  181 QLLTPNSASK SKNNNKKRNY MDEDTNESMT EPKKTKTTKP GKQTKSQSLS VLSTPKKGSS 240
  241 ASLSTFASSK NISPDSSLSH NASSNTYVTA AAAAPRLSKL LPKNGFKKNS RSSSELAAIH 300
  301 KVISTQTPIE SSSESSQYNS SSSSPVNSAA ASSAESLSDI NSSQDNGRES NPSSQESRNE 360
  361 VTNWMKIVRN GFLTHDIESP ESITLDDLEN IFN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits