YRC Public Data Repository - Protein Structure Prediction

Protein:	VMA4
Organism:	Saccharomyces cerevisiae
Length:	233 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VMA4.

Description	E-value	Query Range	Subject Range
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-53	[8..218]	[1..226]
gi\|60652551, gi\|... - gi\|60652551\|gb\|AAX28970.1\| ATPase H+ transporting lysosomal 31kDa V1 subunit E isoform 1 [synthetic ...	6.0E-53	[6..233]	[1..226]
gi\|148222767, gi... - gi\|32450118\|gb\|AAH54191.1\| MGC64332 protein [Xenopus laevis], gi\|148222767\|ref\|NP_001079767.1\| hypot...	6.0E-53	[6..233]	[1..226]
ATP6V1E1 - ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 HGNC:857\|MIM:108... - H+ transporting, lysosomal 31kDa, V1 subunit E1 gi\|114684967 - gi\|114684967\|ref\|XP_514965.2\| PREDICTED: vacuolar H+ ATPase E1 isoform 4 [Pan troglodytes] VATE1_MACFA - V-type proton ATPase subunit E 1 OS=Macaca fascicularis GN=ATP6V1E1 PE=2 SV=1 gi\|190690781, gi... - gi\|60655655\|gb\|AAX32391.1\| ATPase lysosomal V1 subunit E isoform 1 [synthetic construct], gi\|6065565...	6.0E-53	[6..233]	[1..226]
VATE1_BOVIN - V-type proton ATPase subunit E 1 OS=Bos taurus GN=ATP6V1E1 PE=2 SV=1	2.0E-52	[6..233]	[1..226]
VATE1_MOUSE - V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2 gi\|55716072 - gb\|AAH86095.1\| Unknown (protein for MGC:98473) [Xenopus laevis] tr\|M3W8X9\|M3W8X9... - ATPase H+ transporting V1 subunit E1 OS=Felis catus GN=ATP6V1E1 PE=3 SV=1	3.0E-52	[6..233]	[1..226]
gi\|125527135 - gi\|125527135\|gb\|EAY75249.1\| hypothetical protein OsI_03137 [Oryza sativa Indica Group] gi\|115438975, gi... - gi\|34912000\|ref\|NP_917347.1\| putative YLP [Oryza sativa (japonica cultivar-group)], gi\|215700945\|dbj...	3.0E-52	[8..225]	[1..227]
VATE_GOSHI - V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1	3.0E-52	[8..225]	[1..234]
VATE_CITUN - V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1	4.0E-52	[8..222]	[1..224]

Back

Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAITALTP NQVNDELNKM QAFIRKEAEE KAKEIQLKAD QEYEIEKTNI VRNETNNIDG  60
   61 NFKSKLKKAM LSQQITKSTI ANKMRLKVLS AREQSLDGIF EETKEKLSGI ANNRDEYKPI 120
  121 LQSLIVEALL KLLEPKAIVK ALERDVDLIE SMKDDIMREY GEKAQRAPLE EIVISNDYLN 180
  181 KDLVSGGVVV SNASDKIEIN NTLEERLKLL SEEALPAIRL ELYGPSKTRK FFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	92.522879
Match:	PF01991
Description:	ATP synthase (E/31 kDa) subunit

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits