| Protein: | GNT1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 491 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GNT1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..491] | [1..491] |
|
|
0.0 | [45..486] | [56..454] |
|
|
3.0E-49 | [19..278] | [187..438] |
|
|
2.0E-44 | [82..242] | [11..162] |
|
|
3.0E-44 | [63..242] | [2..168] |
|
|
1.0E-43 | [93..269] | [5..168] |
|
|
3.0E-43 | [69..242] | [2..166] |
|
Region A: Residues: [1-82] |
1 11 21 31 41 51
| | | | | |
1 MRLISKRRIR FIVFILFGVL TVFVVSRLVV HFQYNQEIKF YKKYFQQRKD GLHEIYNPLE 60
61 IKQIPKETID DLYTARLDKE LK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.502 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.641 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.632 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.599 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.627 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.641 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.632 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.627 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.599 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.502 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.501 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.496 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.487 | a.77.1 | DEATH domain |
| View | Download | 0.472 | a.101.1 | Uteroglobin-like |
| View | Download | 0.446 | a.112.1 | Description not found. |
| View | Download | 0.442 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.442 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.431 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.430 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.425 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.411 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.391 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.387 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.379 | a.64.1 | Saposin |
| View | Download | 0.378 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.376 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.375 | a.7.7 | BAG domain |
| View | Download | 0.372 | a.4.1 | Homeodomain-like |
| View | Download | 0.370 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.369 | a.77.1 | DEATH domain |
| View | Download | 0.362 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.331 | a.118.14 | FliG |
| View | Download | 0.320 | a.65.1 | Annexin |
| View | Download | 0.315 | a.60.8 | HRDC-like |
| View | Download | 0.309 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.304 | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.301 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.299 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.297 | a.180.1 | N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |
| View | Download | 0.292 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.285 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.281 | a.47.2 | t-snare proteins |
| View | Download | 0.278 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.277 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.277 | a.24.3 | Cytochromes |
| View | Download | 0.276 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.275 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.275 | a.4.1 | Homeodomain-like |
| View | Download | 0.272 | a.19.1 | Fertilization protein |
| View | Download | 0.272 | d.68.7 | R3H domain |
| View | Download | 0.271 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.265 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.263 | a.3.1 | Cytochrome c |
| View | Download | 0.260 | b.82.4 | Regulatory protein AraC |
| View | Download | 0.259 | a.46.1 | Methionine synthase domain |
| View | Download | 0.259 | a.77.1 | DEATH domain |
| View | Download | 0.259 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.252 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.251 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.250 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.236 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.235 | a.26.1 | 4-helical cytokines |
| View | Download | 0.234 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.231 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.230 | a.4.1 | Homeodomain-like |
| View | Download | 0.230 | f.16.1 | Gated mechanosensitive channel |
| View | Download | 0.227 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.223 | a.64.1 | Saposin |
| View | Download | 0.219 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.217 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.214 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.212 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.211 | a.21.1 | HMG-box |
| View | Download | 0.208 | a.134.1 | Fungal elicitin |
| View | Download | 0.203 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.203 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.200 | c.55.4 | Translational machinery components |
|
Region A: Residues: [83-340] |
1 11 21 31 41 51
| | | | | |
1 NGEVIEWSKF AYVNYVTNAD YLCNTLIIFN DLKQEFETKA KLVLLISKDL LDPNTSSNVA 60
61 YISSLLNKIQ AIDEDQVVIK LIDNIVKPKD TTPWNESLTK LLVFNQTEFD RVIYLDNDAI 120
121 LRSSLDELFF LPNYIKFAAP LTYWFLSNSD LEKSYHETRH REKQPINLQS YTKVLTKRIG 180
181 KGQMIYNHLP SLPHSLYLNS NNIAQDIISS TSSLSPLFDF QSSKKVGKLK FASNLMVINP 240
241 SKEAFDEIVN VMLPKILN
|
| Detection Method: | |
| Confidence: | 42.09691 |
| Match: | 1ll0A_ |
| Description: | Glycogenin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| UDP-glycosyltransferase activity | 6.50620584399191 | bayes_pls_golite062009 |
| acetylgalactosaminyltransferase activity | 6.18010634203776 | bayes_pls_golite062009 |
| polypeptide N-acetylgalactosaminyltransferase activity | 6.10775566377356 | bayes_pls_golite062009 |
| mannosyltransferase activity | 5.57855076532185 | bayes_pls_golite062009 |
| transferase activity, transferring glycosyl groups | 4.57071306027628 | bayes_pls_golite062009 |
| transferase activity, transferring hexosyl groups | 4.49413422196176 | bayes_pls_golite062009 |
| alpha-1,2-mannosyltransferase activity | 3.80392076707564 | bayes_pls_golite062009 |
| transferase activity | 2.62166586999833 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 2.01768771829228 | bayes_pls_golite062009 |
| catalytic activity | 1.88676710996045 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 1.31793036737589 | bayes_pls_golite062009 |
| lactose synthase activity | 1.27388044382276 | bayes_pls_golite062009 |
| N-acetyllactosamine synthase activity | 1.27388044382276 | bayes_pls_golite062009 |
| alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity | 0.734643988700831 | bayes_pls_golite062009 |
| glucuronosyltransferase activity | 0.36353543999278 | bayes_pls_golite062009 |
| uridylyltransferase activity | 0.321928989676507 | bayes_pls_golite062009 |
| UDP-galactosyltransferase activity | 0.10185872015123 | bayes_pls_golite062009 |
| galactosyltransferase activity | 0.0931461042017721 | bayes_pls_golite062009 |
| binding | 0.074398891333042 | bayes_pls_golite062009 |
| acetylglucosaminyltransferase activity | 0.0278258721775009 | bayes_pls_golite062009 |
| galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity | 0.00787862255329008 | bayes_pls_golite062009 |
|
Region A: Residues: [341-491] |
1 11 21 31 41 51
| | | | | |
1 KKEKYDMDLI NEEMYNLKKI IYKQFIFFRK VRKLFKPEVL VLPFARYGLL TGSLRNPRHY 60
61 SIIYNDVLGY KTLDNDGNDI PVGLNDSVAY SKYIHFSDYP LAKPWNYPSM KEFECIVKEE 120
121 DAEDSKLEHQ ACDLWNSVYA SYIQSREICL V
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
