YRC Public Data Repository - Protein Structure Prediction

Protein:	BUD7
Organism:	Saccharomyces cerevisiae
Length:	746 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BUD7.

Description	E-value	Query Range	Subject Range
gi\|190407600 - gi\|190407600\|gb\|EDV10867.1\| bud site selection protein 7 [Saccharomyces cerevisiae RM11-1a] BUD7 - Member of the ChAPs family of proteins (Chs5p-Arf1p-binding proteins: Bch1p, Bch2p, Bud7p, Chs6p), t... BUD7_YEAST - Bud site selection protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUD7 PE=1 S...	0.0	[1..746]	[1..746]
SPBC31F10.16 - ChAPs family protein YB2G_SCHPO - Uncharacterized protein C31F10.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC31F1...	0.0	[7..730]	[9..663]
gi\|85082478 - gi\|85082478\|ref\|XP_956922.1\| hypothetical protein NCU04511 [Neurospora crassa OR74A] gi\|32406502, gi\|... - gi\|32406502\|ref\|XP_323864.1\| hypothetical protein [Neurospora crassa], gi\|28918003\|gb\|EAA27686.1\| co...	0.0	[108..544]	[31..448]
gi\|6179405 - gi\|6179405\|emb\|CAB59913.1\| hypothetical protein [Candida albicans]	1.0E-89	[108..704]	[37..700]
gi\|6474345 - gi\|6474345\|dbj\|BAA87246.1\| Hypothetical nuclear protein [Schizosaccharomyces pombe]	3.0E-74	[263..483]	[1..204]

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Predicted Domain #1

Region A:
Residues: [1-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITQNSIPEV KEDFIGYALH ERRIRLPQFQ DLGPADLVTL TKYLPTSSNT NAINSTSRNG  60
   61 AAIIQSPAAV VADDSAASMA TNGDASDTAV TTNYTNASIY SSSRNANDGA PMVAELHPLD 120
  121 KLKDEVGTFF YSMGVDTSGP TSIAIFLKEI SEVISEKPQV WFGRKKTFNV ARISFSTWNA 180
  181 FRRCDINVVV HIPGSIQNFI VDCNGESQNI EMCADYDLIW AETFVSGVVR SIMLMKENAE 240
  241 EGELQNLVET LILNPFTAGQ IDDVPEMFID LFPIVYHKGP LLGAPYYITN VTNTNNYLVE 300
  301 TLVEIVKLTR NVSRAEIMLK NLATDNPEAI IILIKIFLVC DQELDAIKLT YDMLSQDKII 360
  361 NNT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [364-472]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNRMDYKSEL LCLQAQFLID KRQDYSLAQN IAQEAVNCSP SEFRPWYLLS KVYVKLNDIE  60
   61 NALLILNSCP MSPLKEKYVL KRVAPLPSNN SLHLPLPIDV VLDEVTSLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	2.221849
Match:	1na3A_
Description:	Designed protein cTPR2
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [473-746]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQDVQNEHRS ADPMLVNLAA SNLKSTFQLA YRLLTEIVQI TGWENLLKYR SNIFVMEEEY  60
   61 QKSSSSLPKD VNKQEEQPLR AKRLCERWLD NLFMLLYEDL KMYTLWQTEQ LYMDAQNNNH 120
  121 NKLTFEWELF GLCARRLGHF PEAAKAFQNG LSQRFSSRCA RKLLEYCINE RQRVKNFINS 180
  181 PNSHDMVPEI VSSRIRELDN SIIDLCVKIC CWNHRWYTEF SISLLDCLSV VIQDMSLTKV 240
  241 SNEISSRYPE TVLNLVQENL LNFFTTCTIG CYDA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits