YRC Public Data Repository - Protein Structure Prediction

Protein:	YOR287C
Organism:	Saccharomyces cerevisiae
Length:	300 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR287C.

Description	E-value	Query Range	Subject Range
YOR287C - Component of 90S preribosomes; involved in early cleavages of the 35S pre-rRNA and in production of ... RRP36_YEAST - rRNA biogenesis protein RRP36 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP36 PE=1...	7.0E-65	[1..300]	[1..300]
C6orf153 - chromosome 6 open reading frame 153	3.0E-45	[83..298]	[48..258]
gi\|21450075, gi\|... - gi\|21450075\|ref\|NP_659106.1\| hypothetical protein LOC224823 [Mus musculus], gi\|15030015\|gb\|AAH11248....	4.0E-42	[73..298]	[8..225]
gi\|11595644 - gi\|11595644\|emb\|CAC18264.1\| conserved hypothetical protein [Neurospora crassa] RRP36_NEUCR - rRNA biogenesis protein rrp-36 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / D...	1.0E-40	[14..299]	[52..327]
CE21711 - status:Confirmed UniProt:Q8MNX1 protein_id:AAM34816.1	2.0E-40	[15..296]	[172..450]
gi\|20856106, gi\|... - gi\|79317851\|ref\|NP_001031031.1\| unknown protein [Arabidopsis thaliana], gi\|22329516\|ref\|NP_172725.2\|...	7.0E-29	[74..298]	[22..245]
SPAC823.04 - rRNA processing protein, DUF947 gi\|19114743 - gi\|19114743\|ref\|NP_593831.1\| hypothetical protein SPAC823.04 [Schizosaccharomyces pombe 972h-]	7.0E-27	[118..298]	[9..181]

Back

Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYYFKNLKP DLNSDVEEDD GNLLESIMAN KSKREIDEQE SSDDELKTLS FGSLKKAETV  60
   61 IDEEDFKDTK PVHKKPITTT YREESFDEDE DSEDQSDEDA GFFEEDSEDE THHGQKVPKK 120
  121 KSKHAPVEQS SKKRVPRVRN IPGLEIPRNK RSNLYQDIRF DKSTGKALDS SIIRKRYQFL 180
  181 DEYREKEIDE LQKLLQERKF LSKIDQGERE EMEQRLKSMK SRLQSMKNKD LEREILKEYE 240
  241 NDMNKNNNTR YHLKKSEKRK VVQKWKFDHM KAKQREKVME RKRKKRLGKE FKQFEFHNRR 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	Pcons
Confidence:	1.71
Match:	1c1gB
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits