| Protein: | RIM20 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 661 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIM20.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-61 | [149..659] | [842..1366] |
|
|
6.0E-60 | [149..659] | [845..1369] |
|
|
2.0E-59 | [149..659] | [847..1371] |
|
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2.0E-58 | [149..659] | [477..1001] |
|
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2.0E-58 | [149..659] | [840..1364] |
|
Region A: Residues: [1-148] |
1 11 21 31 41 51
| | | | | |
1 MSELLAIPLK RTLEVDFATE LSKLIDTTSF QTASFFQSDI LKVVDARNNA IAPDISIDGL 60
61 SALKEYYVIL LQLEKKFPNN QIEFTWFQTL SQKSRGTSQY SLQWEKLTII YNIGCMYSLL 120
121 ALNSNNDAAE SLKTSCLYFQ NAAGCFKH
|
| Detection Method: |  |
| Confidence: | 64.853872 |
| Match: | PF03097 |
| Description: | BRO1-like domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [149-468] |
1 11 21 31 41 51
| | | | | |
1 VLDHQKNLET IPVVDDATLN ALTSLMLAQA QECFWFKAVQ DKHKDSLIAK LSQQIVDFYC 60
61 EAINDAQRGK LIRSDWINHL KAKKAYFSAV TYYRIALSFN EKKQFGNVVK ALQMGLQFIN 120
121 ESTLSSQAKF KTVVESSLKE AQRDNEFIYL QEVPSELPSI KPALMVKPSS SATLLPSIKK 180
181 DETLFKDLIP IEVMEYCTAY NERQDEYVEQ RVTNPLASLN KLLKESLTTF QIPQGLTKVS 240
241 EAELSHYQAS LNNLLINNKN VQVQLDNIEQ ILNEEAFTDN QLRLKHGTLN WTLPESSTTN 300
301 TAYYEKLKKL RGYLDEGSAI
|
| Detection Method: | |
| Confidence: | 25.221849 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [469-661] |
1 11 21 31 41 51
| | | | | |
1 DKQTNELFQS IDKNLIGSEI RLPESNDPLT NKIKMIIQER NDYIDRTRRK SSEYRILPKI 60
61 ITSYKKNGTV DFEPIFIGHL KYFDEDLRYV NSTKEENIKL IEEVNLSKKN NPGRSGIEPK 120
121 KMVRIDPREL YIEDLRYSFK LLDEVKENLS AGTAFYENLI TSTSNLYNEV QEYDTARRAE 180
181 KARLDKSLTF EDQ
|
| Detection Method: | |
| Confidence: | 9.154902 |
| Match: | 1c1gA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
