YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RPN8
Organism: Saccharomyces cerevisiae
Length: 338 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPN8.

Description E-value Query
Range
Subject
Range
RPN8_YEAST - 26S proteasome regulatory subunit RPN8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=R...
RPN8 - Essential, non-ATPase regulatory subunit of the 26S proteasome; has similarity to the human p40 prot...
0.0 [1..338] [1..338]
gi|220958480, gi... - gi|220958480|gb|ACL91783.1| Mov34-PA [synthetic construct], gi|220949558|gb|ACL87322.1| Mov34-PA [sy...
FBpp0305141, Mov... - The gene Mov34 is referred to in FlyBase by the symbol Dmel\Mov34 (CG3416, FBgn0002787). It is a pro...
gi|194194960, gi... - gi|195586378|ref|XP_002082951.1| GD11854 [Drosophila simulans], gi|194194960|gb|EDX08536.1| GD11854 ...
gi|195353107, gi... - gi|195353107|ref|XP_002043047.1| GM11856 [Drosophila sechellia], gi|194127135|gb|EDW49178.1| GM11856...
3.0E-99 [4..337] [7..324]
RPN8_NEUCR - 26S proteasome regulatory subunit rpn-8 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 7...
RPN8_NEUCR - 26S proteasome regulatory subunit rpn-8 OS=Neurospora crassa GN=rpn-8 PE=3 SV=1
2.0E-97 [1..338] [9..345]
gi|2599117 - gi|2599117|gb|AAB84057.1| proteasome regulatory subunit 12 [Hypocrea jecorina]
1.0E-95 [1..328] [9..328]
PSMD7_MOUSE - 26S proteasome non-ATPase regulatory subunit 7 OS=Mus musculus GN=Psmd7 PE=1 SV=2
8.0E-86 [3..301] [4..285]
gi|17297979 - gi|17297979|dbj|BAB78487.1| 26S proteasome regulatory particle non-ATPase subunit8 [Oryza sativa Jap...
1.0E-85 [4..303] [13..295]
PSMD7 - proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
gi|114663622, gi... - gi|114663622|ref|XP_511103.2| PREDICTED: proteasome 26S non-ATPase subunit 7 isoform 2 [Pan troglody...
2.0E-85 [3..301] [4..285]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
6.0E-85 [3..301] [4..285]
PSD7B_ARATH - 26S proteasome non-ATPase regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPN8B PE=1 SV=1
3.0E-84 [4..303] [13..295]

Back

Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQHEKVTI APLVLLSALD HYERTQTKEN KRCVGVILGD ANSSTIRVTN SFALPFEEDE  60
   61 KNSDVWFLDH NYIENMNEMC KKINAKEKLI GWYHSGPKLR ASDLKINELF KKYTQNNPLL 120
  121 LIVDV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 46.113509
Match: PF01398
Description: Mov34/MPN/PAD-1 family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [126-338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQQGVGLPTD AYVAIEQVKD DGTSTEKTFL HLPCTIEAEE AEEIGVEHLL RDVRDQAAGG  60
   61 LSIRLTNQLK SLKGLQSKLK DVVEYLDKVI NKELPINHTI LGKLQDVFNL LPNLGTPDDD 120
  121 EIDVENHDRI NISNNLQKAL TVKTNDELMV IYISNLVRSI IAFDDLIENK IQNKKIQEQR 180
  181 VKDKQSKVSD DSESESGDKE ATAPLIQRKN KKN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle