| Protein: | CLP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 445 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..445] | [1..445] |
|
|
0.0 | [13..445] | [2..423] |
|
|
0.0 | [14..445] | [3..423] |
|
|
2.0E-91 | [17..445] | [17..442] |
|
|
7.0E-90 | [24..445] | [2..456] |
|
|
4.0E-86 | [22..445] | [5..423] |
|
|
3.0E-72 | [38..312] | [15..253] |
|
|
1.0E-71 | [39..312] | [16..253] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MASLPGIDEH TTSEELITGD NEWHKLVIPK GSDWQIDLKA EGKLIVKVNS GIVEIFGTEL 60
61 AVDDEYTFQN WKFPIYAVEE TELLWKCPDL TTNTITVKPN HTMKYI
|
| Detection Method: |  |
| Confidence: | 47.045757 |
| Match: | 1jpjA_ |
| Description: | Signal sequence recognition protein Ffh; GTPase domain of the signal sequence recognition protein Ffh |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [107-362] |
1 11 21 31 41 51
| | | | | |
1 YNLHFMLEKI RMSNFEGPRV VIVGGSQTGK TSLSRTLCSY ALKFNAYQPL YINLDPQQPI 60
61 FTVPGCISAT PISDILDAQL PTWGQSLTSG ATLLHNKQPM VKNFGLERIN ENKDLYLECI 120
121 SQLGQVVGQR LHLDPQVRRS GCIVDTPSIS QLDENLAELH HIIEKLNVNI MLVLCSETDP 180
181 LWEKVKKTFG PELGNNNIFF IPKLDGVSAV DDVYKRSLQR TSIREYFYGS LDTALSPYAI 240
241 GVDYEDLTIW KPSNVF
|
| Detection Method: | |
| Confidence: | 47.045757 |
| Match: | 1jpjA_ |
| Description: | Signal sequence recognition protein Ffh; GTPase domain of the signal sequence recognition protein Ffh |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [363-445] |
1 11 21 31 41 51
| | | | | |
1 DNEVGRVELF PVTITPSNLQ HAIIAITFAE RRADQATVIK SPILGFALIT EVNEKRRKLR 60
61 VLLPVPGRLP SKAMILTSYR YLE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.340 | 0.121 | mRNA cleavage | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.443 | 0.095 | mRNA cleavage | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.332 | 0.063 | mRNA cleavage | d.95.2 | Homing endonucleases |
| View | Download | 0.373 | 0.026 | mRNA cleavage | d.12.1 | Ribosomal proteins L23 and L15e |
| View | Download | 0.295 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.275 | N/A | N/A | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.274 | N/A | N/A | d.17.1 | Cystatin/monellin |
| View | Download | 0.237 | N/A | N/A | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.228 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.228 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.221 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.205 | N/A | N/A | b.1.2 | Fibronectin type III |
