YRC Public Data Repository - Protein Structure Prediction

Protein:	SSP2
Organism:	Saccharomyces cerevisiae
Length:	371 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSP2.

Description	E-value	Query Range	Subject Range
gi\|16033634 - gi\|16033634\|gb\|AAL13305.1\|AF418016_1 Ssp2p [Saccharomyces cerevisiae]	452.0	[0..1]	[371..1]
gi\|28883273, gi\|... - gi\|28883273\|gb\|AAO49720.1\| TIA-1 [Gallus gallus], gi\|118101449\|ref\|XP_001233232.1\| PREDICTED: simila...	265.0	[0..93]	[356..25]
gi\|54303906 - gi\|54303906\|gb\|AAV33303.1\| aging-associated gene 7 protein [Homo sapiens]	264.0	[0..93]	[356..27]
gi\|73998694 - gi\|73998694\|ref\|XP_865306.1\| PREDICTED: similar to Nucleolysin TIAR (TIA-1 related protein) isoform ...	264.0	[0..93]	[356..27]
gi\|149067624 - gi\|149067624\|gb\|EDM17176.1\| Tial1 cytotoxic granule-associated RNA binding protein-like 1 (mapped), ... gi\|148685700, gi... - gi\|148685700\|gb\|EDL17647.1\| Tial1 cytotoxic granule-associated RNA binding protein-like 1, isoform C...	264.0	[0..93]	[356..27]
gi\|76655193 - gi\|76655193\|ref\|XP_871761.1\| PREDICTED: similar to Nucleolysin TIAR (TIA-1 related protein) isoform ...	264.0	[0..93]	[356..27]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKNYYSNTE VYKKHKDSGS LRKKALRSRR SSFFSFFNDS SSSNGNEFIG FRRFAKAYLF  60
   61 GREIGSCGTD SYTPVGANVN KRRLKKEDKN DQQLWKRQHH SQGCFFPIDD DSNKQTEAAV 120
  121 NKFYENGEYV NQDLIFKGKV YSEESEVVDE KTAG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [155-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQNPALLKTR SISLNDIPRG TGISSVLSQV RGGSLERIIV YRYDTPERSL HKVDLFFLNY  60
   61 EGAQSFMRYA KTNIFKVNGV QLKPEWIFLE STYENIMKEQ SVNRIIEEEK FISRCLIVKK 120
  121 SSTTAMPNKS NLNKGQTLEN IDIQELEKDF QNFGEVLEIT PIVSRKLCVS IFFYDISSAM 180
  181 RAMEEYEQKG SYLYNKYFKT WTIWYGKDIT DQPCIDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	1cvjA
Description:	Poly(A)-binding protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits