YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL33B
Organism:	Saccharomyces cerevisiae
Length:	107 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL33B.

Description	E-value	Query Range	Subject Range
RL33A_SCHPO - 60S ribosomal protein L33-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl35b PE=3 SV... rpl3701 - 60S ribosomal protein L37	2.0E-41	[2..107]	[3..108]
RL35A_RAT - 60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1 RL35A_MOUSE - 60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=1 SV=2 tr\|G1SF08\|G1SF08... - pep:novel chromosome:oryCun2:14:93169690:93172758:1 gene:ENSOCUG00000001232 transcript:ENSOCUT000000...	4.0E-41	[4..107]	[2..110]
RL35A_XENLA - 60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2	9.0E-41	[4..107]	[2..110]
gi\|12833486 - gi\|12833486\|dbj\|BAB22541.1\| unnamed protein product [Mus musculus]	2.0E-40	[4..107]	[2..110]
RL33B_SCHPO - 60S ribosomal protein L33-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl35a PE=1 SV... rpl35a - 60S ribosomal protein L35a	3.0E-40	[2..107]	[3..108]
gi\|255522897, gi... - gi\|255522897\|ref\|NP_001157352.1\| ribosomal protein L35a [Equus caballus], gi\|149731533\|ref\|XP_001501... RPL35A - ribosomal protein L35a gi\|109064986, gi... - gi\|109113810\|ref\|XP_001110581.1\| PREDICTED: similar to ribosomal protein L35a isoform 2 [Macaca mula... ENSCJAT00000001414 - null tr\|M3X8D8\|M3X8D8... - Uncharacterized protein OS=Felis catus GN=LOC105260418 PE=4 SV=1 CCDS33930.1_1 - null RL35A_PONPY - 60S ribosomal protein L35a - Pongo pygmaeus (Orangutan) RL35A_PONAB - 60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1 gi\|114591398, gi... - gi\|114591398\|ref\|XP_001167396.1\| PREDICTED: similar to Ribosomal protein L35a isoform 3 [Pan troglod... RL35A_MACFA - 60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3 SV=1 gi\|74002782, gi\|... - gi\|74002782\|ref\|XP_858367.1\| PREDICTED: similar to ribosomal protein L35a isoform 4 [Canis familiari...	3.0E-40	[4..107]	[2..110]
R35A3_ARATH - 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1	3.0E-40	[3..107]	[8..112]
RL35A_ICTPU - 60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3 SV=1	7.0E-40	[5..107]	[3..110]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESHRLYVK GKHLSYQRSK RVNNPNVSLI KIEGVATPQE AQFYLGKRIA YVYRASKEVR  60
   61 GSKIRVMWGK VTRTHGNSGV VRATFRNNLP AKTFGASVRI FLYPSNI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	69.657577
Match:	PF01247
Description:	Ribosomal protein L35Ae

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	8.74976995123472	bayes_pls_golite062009
structural molecule activity	8.17182185344538	bayes_pls_golite062009
translation initiation factor activity	2.68619850021832	bayes_pls_golite062009
nucleic acid binding	2.39500449599674	bayes_pls_golite062009
RNA binding	2.33551163092904	bayes_pls_golite062009
translation regulator activity	2.20347076721097	bayes_pls_golite062009
translation factor activity, nucleic acid binding	2.18748808024313	bayes_pls_golite062009
binding	1.82018436093208	bayes_pls_golite062009
peptidyltransferase activity	1.25473146071242	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	0.588710983191844	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	0.588710983191844	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	0.587833689405549	bayes_pls_golite062009
ligase activity	0.179232439709325	bayes_pls_golite062009
protein binding	0.142220848362339	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: