YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL33B
Organism:	Saccharomyces cerevisiae
Length:	107 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL33B.

Description	E-value	Query Range	Subject Range
RL33A_SCHPO - 60S ribosomal protein L33-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl35b PE=3 SV... rpl3701 - 60S ribosomal protein L37	2.0E-41	[2..107]	[3..108]
RL35A_RAT - 60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1 RL35A_MOUSE - 60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=1 SV=2 tr\|G1SF08\|G1SF08... - pep:novel chromosome:oryCun2:14:93169690:93172758:1 gene:ENSOCUG00000001232 transcript:ENSOCUT000000...	4.0E-41	[4..107]	[2..110]
RL35A_XENLA - 60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2	9.0E-41	[4..107]	[2..110]
gi\|12833486 - gi\|12833486\|dbj\|BAB22541.1\| unnamed protein product [Mus musculus]	2.0E-40	[4..107]	[2..110]
RL33B_SCHPO - 60S ribosomal protein L33-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl35a PE=1 SV... rpl35a - 60S ribosomal protein L35a	3.0E-40	[2..107]	[3..108]
gi\|255522897, gi... - gi\|255522897\|ref\|NP_001157352.1\| ribosomal protein L35a [Equus caballus], gi\|149731533\|ref\|XP_001501... RPL35A - ribosomal protein L35a gi\|109064986, gi... - gi\|109113810\|ref\|XP_001110581.1\| PREDICTED: similar to ribosomal protein L35a isoform 2 [Macaca mula... ENSCJAT00000001414 - null tr\|M3X8D8\|M3X8D8... - Uncharacterized protein OS=Felis catus GN=LOC105260418 PE=4 SV=1 CCDS33930.1_1 - null RL35A_PONPY - 60S ribosomal protein L35a - Pongo pygmaeus (Orangutan) RL35A_PONAB - 60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1 gi\|114591398, gi... - gi\|114591398\|ref\|XP_001167396.1\| PREDICTED: similar to Ribosomal protein L35a isoform 3 [Pan troglod... RL35A_MACFA - 60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3 SV=1 gi\|74002782, gi\|... - gi\|74002782\|ref\|XP_858367.1\| PREDICTED: similar to ribosomal protein L35a isoform 4 [Canis familiari...	3.0E-40	[4..107]	[2..110]
R35A3_ARATH - 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1	3.0E-40	[3..107]	[8..112]
RL35A_ICTPU - 60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3 SV=1	7.0E-40	[5..107]	[3..110]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESHRLYVK GKHLSYQRSK RVNNPNVSLI KIEGVATPQE AQFYLGKRIA YVYRASKEVR  60
   61 GSKIRVMWGK VTRTHGNSGV VRATFRNNLP AKTFGASVRI FLYPSNI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	69.657577
Match:	PF01247
Description:	Ribosomal protein L35Ae

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	8.74976995123472	bayes_pls_golite062009
structural molecule activity	8.17182185344538	bayes_pls_golite062009
translation initiation factor activity	2.68619850021832	bayes_pls_golite062009
nucleic acid binding	2.39500449599674	bayes_pls_golite062009
RNA binding	2.33551163092904	bayes_pls_golite062009
translation regulator activity	2.20347076721097	bayes_pls_golite062009
translation factor activity, nucleic acid binding	2.18748808024313	bayes_pls_golite062009
binding	1.82018436093208	bayes_pls_golite062009
peptidyltransferase activity	1.25473146071242	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	0.588710983191844	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	0.588710983191844	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	0.587833689405549	bayes_pls_golite062009
ligase activity	0.179232439709325	bayes_pls_golite062009
protein binding	0.142220848362339	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: