Protein: | HER1 |
Organism: | Saccharomyces cerevisiae |
Length: | 1246 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HER1.
Description | E-value | Query Range |
Subject Range |
|
964.0 | [0..5] | [1242..2] |
|
625.0 | [0..185] | [1245..135] |
|
587.0 | [0..302] | [1245..267] |
|
583.0 | [0..270] | [1245..176] |
|
379.0 | [0..476] | [1245..503] |
|
372.0 | [0..146] | [889..18] |
|
369.0 | [0..470] | [1245..583] |
Region A: Residues: [1-223] |
1 11 21 31 41 51 | | | | | | 1 MSSKLKYTDI DVPLDWLYKG KRRNRTKSAA STRTSEATTT SVKKTATLPS TAAVPTKTIA 60 61 SPQRPLSGQN VNNELSNSKP AVSAEKVSQQ GQVPTRRTRS HSVSYGLLQK KNNNDDTTDS 120 121 PKISRIRTAQ DQPVKETKSS TLAEPIVSKK GRSRSSSIST SLNERSKKSL FGSLFGRRPS 180 181 TTPSHVVERP LSSQNDHKKS TELPPIDTRQ SKISTPTSTP TTA |
Region A: Residues: [224-292] |
1 11 21 31 41 51 | | | | | | 1 SSKPSSSGGN RHSDGSLTSK LLSIPHNILE TSSTNFNAHH HIQSHHSSGR EQDSPHSESS 60 61 DLPPILEKE |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [293-513] |
1 11 21 31 41 51 | | | | | | 1 TTQKQLQKVS KVNLKRVTIA VQEFNSDPPQ QLPSRKPKRG NVLIPEDMIS APPLISLGIT 60 61 NSSDQSSFQS NISPSYSKDS KEYKLALENF KKAAKEAEKH QKDAYYVAER MAQEVANYKA 120 121 RQLKTSPLTG ATNSAADSAT DQESSSLDAR ASKLHIDKPI NVGAHPFETH QDDNIKYSSH 180 181 LEQTLDVAYT RCCHLREILP IPSTLRQVKG KTAPLQTLKF L |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [514-597] |
1 11 21 31 41 51 | | | | | | 1 NPKPTLVDIL SFCDFIAITP IHNIIFDNVS LTHDMFKIVI CSLVTSPVVE KLGLRNVVIN 60 61 EQSWKLLCKF LLQNKTLIKL DISQ |
Detection Method: | ![]() |
Confidence: | 8.09691 |
Match: | 1dfjI |
Description: | Ribonuclease inhibitor |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [598-639] |
1 11 21 31 41 51 | | | | | | 1 TKARTDLNDS NYRDQMDWEL FCEVLRNREG RPLEELLLNG LR |
Detection Method: | ![]() |
Confidence: | 8.09691 |
Match: | 1dfjI |
Description: | Ribonuclease inhibitor |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [640-869] |
1 11 21 31 41 51 | | | | | | 1 FDKMSFSHFK NILLTFAQMN PKNPIRLGMA NVEFSTECFD FLFNWMSEYN VQGVDLAYNN 60 61 LESLAKRMIK KLARLPYKHL EYFTLNSTNI TSVDDMSYIL KYLSRLPSIK FLDLSNLPQL 120 121 FPGILTSGYK YFPQFPQLKR IHFDFDDLSI KETTMLVSIL AKCETLSHVS LIGQSPMPDA 180 181 SKISDSTDEP DKSKDEKKEQ IVFMRNTLWA SLYAFVRDSH NLVSLDVDYD |
Detection Method: | ![]() |
Confidence: | 8.09691 |
Match: | 1dfjI |
Description: | Ribonuclease inhibitor |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [870-966] |
1 11 21 31 41 51 | | | | | | 1 QVPDEIQSRI ALCLMHNMKR IMDSSFKLDE LTVQDDLIFD GSLITETAEE VLKRLNDKSL 60 61 LQNDVGKKYL LKKYFEKMEK VHHNVQNTID SMFEKRK |
Detection Method: | ![]() |
Confidence: | 4.09691 |
Match: | 1g9uA |
Description: | Leucine rich effector protein YopM |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [967-1246] |
1 11 21 31 41 51 | | | | | | 1 SGELPLQEKE NLLRLLLLEK NLSNILDIFA SMPNIADVVP FSKADNSFPN IGDSTVSANY 60 61 NDGIRPSLKH LDSDRLINDV SIPENDSSIR PHLMATDSGR IIDVTTGKAL LFKSSSNTSL 120 121 AGKRQEEEEG ELHKWGVFVQ HQSSRHNSGL PSSANSSRIS GSLTPDSSVA GGKKGESSRT 180 181 SGTRPKILPK IPTGAELRDA IIKAKGIDSV DDLIKNVTSE KVGLESLYGD ELNSRSPSND 240 241 SLQESQQKAP LQRPLVEDET VTKKYDKLLN DLSNVRHSKT |