YRC Public Data Repository - Protein Structure Prediction

Protein:	SMP3
Organism:	Saccharomyces cerevisiae
Length:	516 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMP3.

Description	E-value	Query Range	Subject Range
SMP3 - Alpha 1,2-mannosyltransferase involved in glycosyl phosphatidyl inositol (GPI) biosynthesis; require...	0.0	[1..516]	[1..516]
gi\|18417492, gi\|... - gi\|21464563\|gb\|AAM52236.1\| AT5g14850/T9L3_150 [Arabidopsis thaliana], gi\|18417492\|ref\|NP_568305.1\| m...	0.0	[3..418]	[39..467]
gi\|148694335, gi... - gi\|9256626\|ref\|NP_061377.1\| phosphatidylinositol glycan anchor biosynthesis, class B [Mus musculus],...	2.0E-96	[6..421]	[51..457]
gi\|17389331 - gi\|17389331\|gb\|AAH17711.1\| Phosphatidylinositol glycan anchor biosynthesis, class B [Homo sapiens]	1.0E-94	[5..416]	[61..463]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-94	[3..418]	[39..444]
GPI10_SCHPO - GPI mannosyltransferase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi10 PE=3 SV=1 gpi10 - pig-B	2.0E-75	[2..414]	[1..429]
gi\|7657993 - gi\|7657993\|dbj\|BAA94863.1\| GPI anchor biosynthesis protein [Trypanosoma brucei] GPI10_TRYBB - GPI mannosyltransferase 3 OS=Trypanosoma brucei brucei GN=GPI10 PE=2 SV=1	3.0E-72	[5..419]	[3..450]

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Predicted Domain #1

Region A:
Residues: [1-516]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRYQWWLYL VYAIGLMLCL GPSYIHPDEH FQCIEILAMQ FMKVKGTIPW EFKSKFAARS  60
   61 YGPLLLVYGP LFTILESFPE IQDNPALILY SMRLQNYVMY LLCYHFLIPK LIRDERKAVQ 120
  121 FMQKSLLLTS YVTWTYQTHT FSNSIETLAL ISTLTVMEDM VNEKNIQRSN FKNSVILGLI 180
  181 FSFGVFNRVT FPAFIFLPCL ILFWKFYRVH WKSFSLLLLS FSFSSCLFVL IDTNIYNNGK 240
  241 GFVITPLNNL KYNLNVQNLQ VHGLHPRYTH LLVNLPQIVG PVLLLAIFSG YKLDKLSTYA 300
  301 IISGLLFLSF FQHQELRFLV PLVPLLVTNL NWTPLSSTLV NKKIFKGTWL LFNIIMAFIM 360
  361 GISHQAGIIQ FLGDYFHFRT EQMGVHIWWK TYSPPTWMYM SNNLTVSSLI NTQDGIESID 420
  421 EVAFSVGNHH VIDLKGCDLP LLTETIRRLR LNGSITPLTL VTPNSMTSEL KKLKRDGTIN 480
  481 LIPKRNYLFH LDLDHLDFND FTTFKPGLTV YSIELL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	1000.0
Match:	PF03901
Description:	Alg9-like mannosyltransferase family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits