| Protein: | VPS17 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 551 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS17.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..551] | [1..551] |
|
|
6.0E-90 | [11..503] | [8..493] |
|
|
3.0E-84 | [11..466] | [31..521] |
|
|
8.0E-83 | [11..466] | [31..520] |
|
|
4.0E-82 | [11..466] | [31..521] |
|
|
9.0E-80 | [33..466] | [5..473] |
|
Region A: Residues: [1-71] |
1 11 21 31 41 51
| | | | | |
1 MTSAVPYDPY DDLDNNPFAE PQEEDSEPAA TTTDGSSSMS EERVGTEQTA ASVQDNGTAN 60
61 NIQNGLGEEG N
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [72-237] |
1 11 21 31 41 51
| | | | | |
1 ATRSKTSNEH NENQQPSQPS ERVILPERSD EKKKYTLLAK VTGLERFGSA TGKKENPTII 60
61 FDCSTNLPTF RKQQYKNVKK SYEEFHQLFK YLNVAIQESF VPTLPSAYTT FGINSEEDRM 120
121 KVTRNFQLWF NRLSQDPLII RNEEVAFFIE SDFNTYTPIN KSKSLA
|
| Detection Method: | |
| Confidence: | 15.221849 |
| Match: | 1h6hA_ |
| Description: | p40phox NADPH oxidase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [238-483] |
1 11 21 31 41 51
| | | | | |
1 SGLKRKTLKQ LAPPYDEITE LAEFRPLVKS IYVVSQSLQE KLLRVSRNRK MMVQEENAFG 60
61 QDFVNLDEHN KLYRRYGKIL TAVGDIDSII ATMDMATLYD GLEWIVRDAY AVKEALTNRH 120
121 FIMRNLVQAQ QNSKAKQEQA RRFRSRRDIN PMKIDEALRQ LKAAAKNEQV LTLKLQRITS 180
181 NMIIERKQWI SWYEEWIRSS IKEFTLRKIE YERKKLTLLE RVRSDIRKAD ENGGLSRLGR 240
241 HAVSNN
|
| Detection Method: | |
| Confidence: | 2.221849 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [484-551] |
1 11 21 31 41 51
| | | | | |
1 NSDTSQTLKG DSWTGESNRK SQIPINKIAH TEFDDELFTE DDGYNSQDSD TTSLNARHAA 60
61 SLLGMSTK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
