| Protein: | RIO1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 484 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIO1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..464] | [1..464] |
|
|
2.0E-90 | [12..434] | [97..522] |
|
|
9.0E-86 | [23..484] | [122..557] |
|
|
3.0E-83 | [9..464] | [114..565] |
|
|
7.0E-80 | [44..484] | [112..521] |
|
|
5.0E-76 | [98..483] | [1..382] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MSLEDKFDSL SVSQGASDHI NNQLLEKYSH KIKTDELSFS RAKTSKDKAN RATVENVLDP 60
61 RTMRFLKSMV TRGVIADLNG CLSTGKEANV YHAFAGTGKA PVI
|
| Detection Method: |  |
| Confidence: | 14.69897 |
| Match: | 2ptk__ |
| Description: | c-src protein tyrosine kinase; c-src tyrosine kinase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [104-200] |
1 11 21 31 41 51
| | | | | |
1 DEETGQYEVL ETDGSRAEYA IKIYKTSILV FKDRERYVDG EFRFRNSRSQ HNPRKMIKIW 60
61 AEKEFRNLKR IYQSGVIPAP KPIEVKNNVL VMEFLSR
|
| Detection Method: | |
| Confidence: | 45.0 |
| Match: | 1a06__ |
| Description: | Calmodulin-dependent protein kinase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [201-417] |
1 11 21 31 41 51
| | | | | |
1 GNGFASPKLK DYPYKNRDEI FHYYHTMVAY MRLLYQVCRL VHADLSEYNT IVHDDKLYMI 60
61 DVSQSVEPEH PMSLDFLRMD IKNVNLYFEK MGISIFPERV IFQFVISETL EKFKGDYNNI 120
121 SALVAYIASN LPIKSTEQDE AEDEIFRSLH LVRSLGGLEE RDFDRYTDGK FDLLKSLIAH 180
181 DNERNFAASE QFEFDNADHE CSSGTEEFSD DEEDGSS
|
| Detection Method: | |
| Confidence: | 45.0 |
| Match: | 1a06__ |
| Description: | Calmodulin-dependent protein kinase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [418-484] |
1 11 21 31 41 51
| | | | | |
1 GSEEDDEEEG EYYDDDEPKV LKGKKHEDKD LKKLRKQEAK DAKREKRKTK VKKHIKKKLV 60
61 KKTKSKK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.335 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.443 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.412 | a.2.7 | tRNA-binding arm |
| View | Download | 0.347 | a.126.1 | Serum albumin-like |
| View | Download | 0.476 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.311 | a.47.2 | t-snare proteins |
| View | Download | 0.277 | a.101.1 | Uteroglobin-like |
| View | Download | 0.262 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.257 | g.57.1 | Serine proteinase inhibitor lekti |
| View | Download | 0.233 | a.46.1 | Methionine synthase domain |
| View | Download | 0.233 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.232 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.230 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.223 | a.2.3 | Chaperone J-domain |
| View | Download | 0.205 | f.30.1 | Photosystem I reaction center subunit X, PsaK |
