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View Structure Prediction Details

Protein: TFC7
Organism: Saccharomyces cerevisiae
Length: 435 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFC7.

Description E-value Query
Range
Subject
Range
TFC7 - One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part...
TFC7_YEAST - Transcription factor tau 55 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...
4.0E-98 [1..435] [1..435]
gi|25530841 - pir||AC2223 phosphoglycerate mutase [imported] - Nostoc sp. (strain PCC 7120)
gi|17230830, gi|... - gi|17230830|ref|NP_487378.1| phosphoglycerate mutase [Nostoc sp. PCC 7120], gi|17132433|dbj|BAB75037...
8.0E-64 [3..412] [1..398]
gi|11761356 - gi|11761356|dbj|BAB19263.1| phosphoglycerate mutase [Thermosynechococcus elongatus BP-1]
2.0E-54 [44..381] [2..327]
gi|3090419 - gi|3090419|emb|CAA06605.1| 6-phosphofructo-2-kinase [Homo sapiens]
3.0E-46 [3..234] [248..458]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
3.0E-45 [1..224] [247..449]
gi|56922 - gi|56922|emb|CAA33606.1| unnamed protein product [Rattus norvegicus]
7.0E-45 [1..224] [226..428]

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Predicted Domain #1
Region A:
Residues: [1-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVNTIYIAR HGYRSNWLPE GPYPDPLTGI DSDVPLAEHG VQQAKELAHY LLSLDNQPEA  60
   61 AFASPFYRCL ETVQPIAKLL EIPVYLERGI GEWYRPDRKP VIPVPAGYEI LSKFFPGVIS 120
  121 QEWDSTLTPN EKGETEQEMY MRFKKFWPLF IERVEKEYPN VECILLVTHA ASKIALGMSL 180
  181 LGYDNPRMSL NENGDKIRSG SCSLDKYEIL KKSYDTIDET DDQTSFTYIP FSD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.522879
Match: 1bq3D_
Description: Phosphoglycerate mutase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [234-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKWVLTMNGN TEFLSSGEEM NWNFDCVAEA GSDADIKKRQ MTKKTSSPIP EADDQTEVET  60
   61 VYISVDIPSG NYKERTEIAK SAILQYSGLE TDAPLFRIGN RLYEGSWERL VGTELAFPNA 120
  121 AHVHKKTAGL LSPTEENETT NAGQSKGSST ANDPNIQIQE EDVGLPDSTN TSRDHTGDKE 180
  181 EVQSEKIYRI KERIVLSNVR PM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle