YRC Public Data Repository - Protein Structure Prediction

Protein:	TFC7
Organism:	Saccharomyces cerevisiae
Length:	435 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFC7.

Description	E-value	Query Range	Subject Range
TFC7 - One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part... TFC7_YEAST - Transcription factor tau 55 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...	4.0E-98	[1..435]	[1..435]
gi\|25530841 - pir\|\|AC2223 phosphoglycerate mutase [imported] - Nostoc sp. (strain PCC 7120) gi\|17230830, gi\|... - gi\|17230830\|ref\|NP_487378.1\| phosphoglycerate mutase [Nostoc sp. PCC 7120], gi\|17132433\|dbj\|BAB75037...	8.0E-64	[3..412]	[1..398]
gi\|11761356 - gi\|11761356\|dbj\|BAB19263.1\| phosphoglycerate mutase [Thermosynechococcus elongatus BP-1]	2.0E-54	[44..381]	[2..327]
gi\|3090419 - gi\|3090419\|emb\|CAA06605.1\| 6-phosphofructo-2-kinase [Homo sapiens]	3.0E-46	[3..234]	[248..458]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-45	[1..224]	[247..449]
gi\|56922 - gi\|56922\|emb\|CAA33606.1\| unnamed protein product [Rattus norvegicus]	7.0E-45	[1..224]	[226..428]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVNTIYIAR HGYRSNWLPE GPYPDPLTGI DSDVPLAEHG VQQAKELAHY LLSLDNQPEA  60
   61 AFASPFYRCL ETVQPIAKLL EIPVYLERGI GEWYRPDRKP VIPVPAGYEI LSKFFPGVIS 120
  121 QEWDSTLTPN EKGETEQEMY MRFKKFWPLF IERVEKEYPN VECILLVTHA ASKIALGMSL 180
  181 LGYDNPRMSL NENGDKIRSG SCSLDKYEIL KKSYDTIDET DDQTSFTYIP FSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.522879
Match:	1bq3D_
Description:	Phosphoglycerate mutase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [234-435]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKWVLTMNGN TEFLSSGEEM NWNFDCVAEA GSDADIKKRQ MTKKTSSPIP EADDQTEVET  60
   61 VYISVDIPSG NYKERTEIAK SAILQYSGLE TDAPLFRIGN RLYEGSWERL VGTELAFPNA 120
  121 AHVHKKTAGL LSPTEENETT NAGQSKGSST ANDPNIQIQE EDVGLPDSTN TSRDHTGDKE 180
  181 EVQSEKIYRI KERIVLSNVR PM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits