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View Structure Prediction Details

Protein: BUD21
Organism: Saccharomyces cerevisiae
Length: 214 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BUD21.

Description E-value Query
Range
Subject
Range
BUD21_YEAST - Bud site selection protein 21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUD21 PE=1...
BUD21 - Component of small ribosomal subunit (SSU) processosome that contains U3 snoRNA; originally isolated...
3.0E-79 [1..214] [1..214]
gi|3668187 - gi|3668187|dbj|BAA33452.1| myosin heavy chain [Theragra chalcogramma]
0.002 [1..180] [854..1050]

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Predicted Domain #1
Region A:
Residues: [1-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNGHVKFDA DESQASASAV TDRQDDVLVI SKKDKEVHSS SDEESDDDDA PQEEGLHSGK  60
   61 SEVESQITQR EEAIRLEQSQ LRSKRRKQNE LYAKQKKSVN ETEVTDEVIA ELPEELLKNI 120
  121 DQKDEGSTQY SSSRHVTFDK LDESDENEEA LAKAIKTKKR KTLKNLRKDS VKRGKFRVQL 180
  181 LSTTQDSKTL PPKKESSIIR SKDRWLNRKA LNKG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDQKDEGSTQ YSSSRHVTFD KLDESDENEE ALAKAIKTKK RKTLKNLRKD SVKRGKFRVQ  60
   61 LLSTTQDSKT LPPKKESSII RSKDRWLNRK ALNKG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 44.309804
Match: PF08297.2
Description: No description for PF08297.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle