| Protein: | MSA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 629 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSA1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..629] | [1..629] |
|
Region A: Residues: [1-547] |
1 11 21 31 41 51
| | | | | |
1 MDKSMIKKRG RPPITKDYPN PLQSPMAHSS MQVQKQGPHS FAKPLMKVGQ SSPSPNKRRL 60
61 SIDHHHNLAA TTRKGRYRGV LLSTPTKKSS TNGSTPISTP SSNDSYNNTV FSETRKTFLQ 120
121 SSPPIMTSSP AFQKKNDYMF PSQEQFKLSL TITESGKAVI AGSLPFSPSS KSSHLMNNNN 180
181 KKIMQNEKIH KGSKKNAPKF EKRRILSLLK QMKNEKYCDT DTLPEAPPAK PSRSDIIDTE 240
241 LPTIIETSAS PIGSARNNNI LLSQPPQSPP SSAQLKPPST PKSSLQFRMG FTPNVALNSV 300
301 SLSDTISKST NAVGASNNNN QNGNSISNIA DANTLLTLTN SPGVFLSPRN KMLPKSTTAS 360
361 NEQQQEFVFK FSSGDPLLLT DDADGNWPEM LFNVSNTPRR QKCFNTPPSW INFGSPGLFS 420
421 PPRSSNVMVN GTTVATASDS GNVHRQLQAQ LEAQVQVQSQ SNSPTQRQQQ QRQFQIPPPH 480
481 INMNSSPPQI NIASPPHQSM SRVSSIYFNK EKTTTGVANM LGNTKSENLQ PPANLFTAAH 540
541 GPSTPRN
|
| Detection Method: |  |
| Confidence: | 9.7 |
| Match: | 1ivoA |
| Description: | EGF receptor extracellular domain; EGF receptor Cys-rich domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.99921478264464 | bayes_pls_golite062009 |
| nucleic acid binding | 2.0106414707696 | bayes_pls_golite062009 |
| protein binding | 1.84406396813419 | bayes_pls_golite062009 |
| growth factor binding | 1.34776702960536 | bayes_pls_golite062009 |
| insulin-like growth factor binding | 0.575677181912068 | bayes_pls_golite062009 |
| catalytic activity | 0.286333564590773 | bayes_pls_golite062009 |
|
Region A: Residues: [548-629] |
1 11 21 31 41 51
| | | | | |
1 QEFQLPTLIE CTPLIQQTMN GSLGTKYIPG TSISNSATPN LHGFPVGTGK APSSFDDSLK 60
61 QNPYSNKQDD ARTALKRLID DQ
|
| Detection Method: | |
| Confidence: | 7.37 |
| Match: | 1m6bA |
| Description: | Receptor protein-tyrosine kinase Erbb-3 extracellular domain; Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.99921478264464 | bayes_pls_golite062009 |
| nucleic acid binding | 2.0106414707696 | bayes_pls_golite062009 |
| protein binding | 1.84406396813419 | bayes_pls_golite062009 |
| growth factor binding | 1.34776702960536 | bayes_pls_golite062009 |
| insulin-like growth factor binding | 0.575677181912068 | bayes_pls_golite062009 |
| catalytic activity | 0.286333564590773 | bayes_pls_golite062009 |
