| Protein: | RTS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 757 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [192..748] | [18..543] |
|
|
0.0 | [192..748] | [18..535] |
|
|
0.0 | [192..748] | [2..527] |
|
|
0.0 | [1..757] | [1..757] |
|
Region A: Residues: [1-282] |
1 11 21 31 41 51
| | | | | |
1 MMRGFKQRLI KKTTGSSSSS SSKKKDKEKE KEKSSTTSST SKKPASASSS SHGTTHSSAS 60
61 STGSKSTTEK GKQSGSVPSQ GKHHSSSTSK TKTATTPSSS SSSSRSSSVS RSGSSSTKKT 120
121 SSRKGQEQSK QSQQPSQSQK QGSSSSSAAI MNPTPVLTVT KDDKSTSGED HAHPTLLGAV 180
181 SAVPSSPISN ASGTAVSSDV ENGNSNNNNM NINTSNTQDA NHASSQSIDI PRSSHSFERL 240
241 PTPTKLNPDT DLELIKTPQR HSSSRFEPSR YTPLTKLPNF NE
|
| Detection Method: |  |
| Confidence: | 12.27 |
| Match: | 1ei3A |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [283-374] |
1 11 21 31 41 51
| | | | | |
1 VSPEERIPLF IAKVDQCNTM FDFNDPSFDI QGKEIKRSTL DELIEFLVTN RFTYTNEMYA 60
61 HVVNMFKINL FRPIPPPVNP VGDIYDPDED EP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.461 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.582 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.614 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.587 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.550 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.458 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.438 | N/A | N/A | c.48.1 | TK C-terminal domain-like |
| View | Download | 0.409 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.375 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.374 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.370 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.369 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.369 | N/A | N/A | d.68.6 | DNA-binding protein Sso10b (AlbA) |
| View | Download | 0.360 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.348 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.341 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.319 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.302 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.292 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.291 | N/A | N/A | d.195.1 | YopH tyrosine phosphatase N-terminal domain |
| View | Download | 0.290 | N/A | N/A | a.2.3 | Chaperone J-domain |
| View | Download | 0.269 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.263 | N/A | N/A | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.255 | N/A | N/A | d.146.1 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |
| View | Download | 0.254 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.251 | N/A | N/A | a.156.1 | S13-like H2TH domain |
| View | Download | 0.250 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.248 | N/A | N/A | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.243 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.241 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.237 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.235 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.233 | N/A | N/A | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.229 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.227 | N/A | N/A | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.225 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.224 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.219 | N/A | N/A | d.38.1 | Thioesterase/thiol ester dehydrase-isomerase |
| View | Download | 0.217 | N/A | N/A | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.213 | N/A | N/A | c.57.1 | Molybdenum cofactor biosynthesis proteins |
| View | Download | 0.212 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.211 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.211 | N/A | N/A | d.99.1 | Ribosomal protein L9 C-domain |
| View | Download | 0.210 | N/A | N/A | a.7.7 | BAG domain |
| View | Download | 0.209 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.209 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.209 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.204 | N/A | N/A | d.78.1 | RPB5-like RNA polymerase subunit |
| View | Download | 0.204 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.202 | N/A | N/A | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
|
Region A: Residues: [375-469] |
1 11 21 31 41 51
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1 VNELAWPHMQ AVYEFFLRFV ESPDFNHQIA KQYIDQDFIL KLLELFDSED IRERDCLKTT 60
61 LHRIYGKFLS LRSFIRRSMN NIFLQFIYET EKFNG
|
| Detection Method: | |
| Confidence: | 8.75 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| phosphoprotein phosphatase activity | 7.41566231556356 | bayes_pls_golite062009 |
| phosphatase activity | 6.2815295903206 | bayes_pls_golite062009 |
| protein serine/threonine phosphatase activity | 6.23975872771765 | bayes_pls_golite062009 |
| phosphoric ester hydrolase activity | 6.04343158483355 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 5.13001603767079 | bayes_pls_golite062009 |
| protein phosphatase type 2A regulator activity | 4.9046120881035 | bayes_pls_golite062009 |
| phosphatase regulator activity | 2.6399267580941 | bayes_pls_golite062009 |
| binding | 2.6374633159018 | bayes_pls_golite062009 |
| protein phosphatase regulator activity | 2.60055057218296 | bayes_pls_golite062009 |
| hydrolase activity | 1.97016752220053 | bayes_pls_golite062009 |
| protein binding | 1.73688475473996 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.698613639309592 | bayes_pls_golite062009 |
| kinase activity | 0.60321289927821 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.590594379094637 | bayes_pls_golite062009 |
| nucleic acid binding | 0.549076739943715 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.500341303844313 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.410980330975135 | bayes_pls_golite062009 |
| transferase activity | 0.23030640245878 | bayes_pls_golite062009 |
| myosin phosphatase activity | 0.0443887387331605 | bayes_pls_golite062009 |
| protein kinase activity | 0.0343779350724151 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 0.0332743336452223 | bayes_pls_golite062009 |
| GTPase regulator activity | 0.0268373969988844 | bayes_pls_golite062009 |
| guanyl ribonucleotide binding | 0.00234756529236324 | bayes_pls_golite062009 |
|
Region A: Residues: [470-757] |
1 11 21 31 41 51
| | | | | |
1 VAELLEILGS IINGFALPLK EEHKVFLVRI LIPLHKVRCL SLYHPQLAYC IVQFLEKDPL 60
61 LTEEVVMGLL RYWPKINSTK EIMFLNEIED IFEVIEPLEF IKVEVPLFVQ LAKCISSPHF 120
121 QVAEKVLSYW NNEYFLNLCI ENAEVILPII FPALYELTSQ LELDTANGED SISDPYMLVE 180
181 QAINSGSWNR AIHAMAFKAL KIFLETNPVL YENCNALYLS SVKETQQRKV QREENWSKLE 240
241 EYVKNLRINN DKDQYTIKNP ELRNSFNTAS ENNTLNEENE NDCDSEIQ
|
| Detection Method: | |
| Confidence: | 8.75 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
