YRC Public Data Repository - Protein Structure Prediction

Protein:	YOL162W
Organism:	Saccharomyces cerevisiae
Length:	215 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOL162W.

Description	E-value	Query Range	Subject Range
YIL166C - Putative protein with similarity to the allantoate permease (Dal5p) subfamily of the major facilitat... YIQ6_YEAST - Uncharacterized transporter YIL166C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL1... gi\|151943002 - gi\|151943002\|gb\|EDN61337.1\| conserved protein [Saccharomyces cerevisiae YJM789]	2.0E-55	[2..215]	[330..542]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-49	[7..196]	[333..527]
gi\|157070075, gi... - gi\|164423396\|ref\|XP_963576.2\| hypothetical protein NCU08715 [Neurospora crassa OR74A], gi\|157070075\|... gi\|16944678 - gi\|16944678\|emb\|CAB99379.2\| conserved hypothetical protein [Neurospora crassa]	1.0E-47	[7..196]	[293..479]
YGDF_SCHPO - Uncharacterized transporter C1773.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1... SPBC1773.15 - membrane transporter	3.0E-47	[3..213]	[291..495]

Back

Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLAYIPTN VLATYLTLVL RSIGFTTFQA NLLAIPNFVL HILLLFGLTW STEKCNNRLG  60
   61 LSLLQPLYTV PLLAVLRFWK GTMFNKWGTY AIITLILDNP YIHAICVSLC SRNSQSVKTR 120
  121 TVSTCLYNMF VQAGLIISSN IYAKS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [146-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAPLYRKGNG VLFGLALFMF PILIGSKLIY VYINKQRDKR WNAMSEEEKD HYLSTTSDAG  60
   61 SRRLDFRFYH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits