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View Structure Prediction Details

Protein: YOL162W
Organism: Saccharomyces cerevisiae
Length: 215 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOL162W.

Description E-value Query
Range
Subject
Range
YIL166C - Putative protein with similarity to the allantoate permease (Dal5p) subfamily of the major facilitat...
YIQ6_YEAST - Uncharacterized transporter YIL166C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL1...
gi|151943002 - gi|151943002|gb|EDN61337.1| conserved protein [Saccharomyces cerevisiae YJM789]
2.0E-55 [2..215] [330..542]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
2.0E-49 [7..196] [333..527]
gi|157070075, gi... - gi|164423396|ref|XP_963576.2| hypothetical protein NCU08715 [Neurospora crassa OR74A], gi|157070075|...
gi|16944678 - gi|16944678|emb|CAB99379.2| conserved hypothetical protein [Neurospora crassa]
1.0E-47 [7..196] [293..479]
YGDF_SCHPO - Uncharacterized transporter C1773.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1...
SPBC1773.15 - membrane transporter
3.0E-47 [3..213] [291..495]

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Predicted Domain #1
Region A:
Residues: [1-145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLAYIPTN VLATYLTLVL RSIGFTTFQA NLLAIPNFVL HILLLFGLTW STEKCNNRLG  60
   61 LSLLQPLYTV PLLAVLRFWK GTMFNKWGTY AIITLILDNP YIHAICVSLC SRNSQSVKTR 120
  121 TVSTCLYNMF VQAGLIISSN IYAKS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.303 0.114 transport a.69.1 C-terminal domain of alpha and beta subunits of F1 ATP synthase
View Download 0.328 0.105 transporter activity a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.320 0.060 transport a.48.2 Transferrin receptor ectodomain, C-terminal domain
View Download 0.538 0.000 transport d.58.8 Viral DNA-binding domain
View Download 0.663 N/A N/A c.49.1 Pyruvate kinase, C-terminal domain
View Download 0.301 N/A N/A a.7.7 BAG domain
View Download 0.293 N/A N/A a.7.8 GAT domain
View Download 0.286 N/A N/A a.24.3 Cytochromes
View Download 0.254 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.243 N/A N/A c.23.16 Class I glutamine amidotransferase-like
View Download 0.242 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.233 N/A N/A d.95.2 Homing endonucleases
View Download 0.225 N/A N/A a.22.1 Histone-fold
View Download 0.218 N/A N/A a.118.8 TPR-like
View Download 0.217 N/A N/A a.78.1 Fatty acid responsive transcription factor FadR, C-terminal domain
View Download 0.215 N/A N/A a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.211 N/A N/A b.118.1 FAS1 domain
View Download 0.201 N/A N/A d.110.2 GAF domain-like

Predicted Domain #2
Region A:
Residues: [146-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAPLYRKGNG VLFGLALFMF PILIGSKLIY VYINKQRDKR WNAMSEEEKD HYLSTTSDAG  60
   61 SRRLDFRFYH 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.477 a.4.5 "Winged helix" DNA-binding domain
View Download 0.491 a.60.1 SAM/Pointed domain
View Download 0.639 d.15.2 CAD & PB1 domains
View Download 0.518 d.68.7 R3H domain
View Download 0.508 a.64.2 Bacteriocin AS-48
View Download 0.445 a.64.1 Saposin
View Download 0.414 d.10.1 DNA-binding domain
View Download 0.411 d.186.1 Head-to-tail joining protein W, gpW
View Download 0.405 a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.396 b.1.2 Fibronectin type III
View Download 0.388 d.68.3 SirA-like
View Download 0.379 d.58.23 Probable ACP-binding domain of malonyl-CoA ACP transacylase
View Download 0.365 a.4.5 "Winged helix" DNA-binding domain
View Download 0.343 d.52.1 Alpha-lytic protease prodomain
View Download 0.334 d.58.8 Viral DNA-binding domain
View Download 0.323 a.28.3 Retrovirus capsid protein C-terminal domain
View Download 0.321 d.68.5 C-terminal domain of ProRS
View Download 0.320 a.4.1 Homeodomain-like
View Download 0.310 d.58.7 RNA-binding domain, RBD
View Download 0.308 a.3.1 Cytochrome c
View Download 0.308 d.58.7 RNA-binding domain, RBD
View Download 0.307 a.4.5 "Winged helix" DNA-binding domain
View Download 0.306 a.4.5 "Winged helix" DNA-binding domain
View Download 0.305 d.37.1 CBS-domain
View Download 0.302 a.4.5 "Winged helix" DNA-binding domain
View Download 0.302 b.1.20 Tp47 lipoprotein, middle and C-terminal domains
View Download 0.296 a.4.1 Homeodomain-like
View Download 0.295 c.47.1 Thioredoxin-like
View Download 0.285 d.68.1 Translation initiation factor IF3, C-terminal domain
View Download 0.284 d.40.1 CI-2 family of serine protease inhibitors
View Download 0.277 a.39.1 EF-hand
View Download 0.273 a.39.1 EF-hand
View Download 0.248 a.44.1 Disulphide-bond formation facilitator (DSBA), insertion domain
View Download 0.242 a.153.1 Nuclear receptor coactivator interlocking domain
View Download 0.238 c.78.2 Aspartate/glutamate racemase
View Download 0.235 d.68.1 Translation initiation factor IF3, C-terminal domain
View Download 0.229 d.27.1 Ribosomal protein S16
View Download 0.222 a.77.1 DEATH domain
View Download 0.209 d.58.7 RNA-binding domain, RBD
View Download 0.201 a.5.2 UBA-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle