YRC Public Data Repository - Protein Structure Prediction

Protein:	HPF1
Organism:	Saccharomyces cerevisiae
Length:	967 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HPF1.

Description	E-value	Query Range	Subject Range
SPBPJ4664.02 - glycoprotein YHU2_SCHPO - Uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02 OS=Schizosaccharomyces pombe (str...	347.0	[0..5]	[961..1357]
gi\|39592304, gi\|... - gi\|39592304\|emb\|CAE75525.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi\|187020927\|em... gi\|157762282 - gi\|157762282\|ref\|XP_001673483.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]	326.0	[0..2]	[964..1019]
ICEN_XANCT - Ice nucleation protein OS=Xanthomonas campestris pv. translucens GN=inaX PE=3 SV=1 gi\|48532, gi\|95020 - gi\|95020\|pir\|\|S11672 ice nucleation protein - Xanthomonas campestris, gi\|48532\|emb\|CAA37140.1\| unnam...	312.0	[0..13]	[966..305]
gi\|14587074 - gi\|14587074\|gb\|AAK70465.1\|AF387802_1 ice protein [Pantoea ananatis]	289.0	[0..8]	[965..114]
gi\|66044853, gi\|... - gi\|66044853\|ref\|YP_234694.1\| hypothetical protein Psyr_1608 [Pseudomonas syringae pv. syringae B728a...	284.0	[0..55]	[965..179]
gi\|15828996 - gi\|15828996\|ref\|NP_326356.1\| lipoprotein VSAC (fragment) [Mycoplasma pulmonis UAB CTIP] gi\|14089939, gi\|... - pir\|\|E90577 lipoprotein vsaC [imported] - Mycoplasma pulmonis (strain UAB CTIP) (fragment), gi\|14089...	279.0	[0..34]	[859..22]
ICEN_ENTAG - Ice nucleation protein OS=Enterobacter agglomerans GN=iceE PE=3 SV=1	269.0	[0..80]	[965..140]
gi\|33310026 - gi\|33310026\|gb\|AAQ03243.1\|AF414112_1 putative cell wall protein FLO11p [Candida albicans] gi\|68482880, gi\|... - gi\|68482880\|ref\|XP_714666.1\| putative cell wall adhesin [Candida albicans SC5314], gi\|46436253\|gb\|EA...	268.0	[0..2]	[962..138]

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Predicted Domain #1

Region A:
Residues: [1-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNRFNKLQA ALALVLYSQS ALGQYYTNSS SIASNSSTAV SSTSSGSVSI SSSIELTSST  60
   61 SDVSSSLTEL TSSSTEVSSS IAPSTSSSEV SSSITSSGSS VSGSSSITSS GSSVSSSSSA 120
  121 TESGSSASGS SSATESGSSV SGSSTSITSG SSSATESGSS VSGSTSATES GSSASGSSSA 180
  181 TESGSSASGS SSATESGSSV SGSSSATESG SSVSGSSSAT ESGSASSVPS SSGSVTESGS 240
  241 SSSASESSIT QSGTASGSSA SSTSGSVTQS GSSVSGSSAS SAPGISSSIP QSTSSASTAS 300
  301 GSITSGTLSS ITSSASSATA TASNSLSSSD GTIYLPSTTI SGDITLTGSV IATEAVEVAA 360
  361 GGKLTLLDGD KYVFSADFII HGGVFVEKSK PTYPGTEFDI SGENFDVSGT FNAEEPAASS 420
  421 ASAYSFTP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [429-491]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSFDNSGDIS LSLSESTKGE VTFSPYSNSG AFSFSNAILN GGSVSGLQRR AESGSVNNGE  60
   61 INL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [492-967]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENGSTYVVVE PVSGSGTINI ISGNLYLHYP DTFTGQTVVF KGEGVLAVDP TETNTTPIPV  60
   61 VGYTGENQIA ITADVTALSY DSATGVLTAT QGNSQFSFSI GTGFSSSGFN VSEGTFAGAY 120
  121 AYYLNYGGVV ASSATPSSTS TTSGATNSTS GSTSFGASVT GSTASTSFGA SVTGSTASTL 180
  181 ISGSPSVYTT TLTYATTTST VVVSCSETTD SNGNVYTITT TVPCSSTTAT ITSCDETGCH 240
  241 VTTSTGTVAT ETVSSKSYTT VTVTHCDNNG CNTKTVTSEC PEETSATTTS PKSYTTVTVT 300
  301 HCDDNGCNTK TVTSEAPEAT TTTVSPKTYT TATVTQCDDN GCSTKTVTSE APKETSETSE 360
  361 TSAAPKTYTT ATVTQCDDNG CNVKIITSQI PEATSTVTAT SASPKSYTTV TSEGSKATSL 420
  421 TTAISKASSA ISTYSKSAAP IKTSTGIIVQ SEGIAAGLNA NTLNALVGIF VLAFFN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits