YRC Public Data Repository - Protein Structure Prediction

Protein:	PEX11
Organism:	Saccharomyces cerevisiae
Length:	236 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX11.

Description	E-value	Query Range	Subject Range
gi\|207341480 - gi\|207341480\|gb\|EDZ69527.1\| YOL147Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407206 - gi\|190407206\|gb\|EDV10473.1\| peroxisomal membrane protein PMP27 [Saccharomyces cerevisiae RM11-1a] PEX11 - Peroxisomal membrane protein required for peroxisome proliferation and medium-chain fatty acid oxida... PEX11_YEAST - Peroxisomal membrane protein PMP27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX11... gi\|151945489 - gi\|151945489\|gb\|EDN63730.1\| peroxin [Saccharomyces cerevisiae YJM789]	1.0E-65	[1..236]	[1..236]
PX11D_ARATH - Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D PE=1 SV=2	2.0E-60	[15..232]	[15..226]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-60	[15..231]	[15..225]
gi\|8489788 - gi\|8489788\|gb\|AAF75750.1\|AF261140_1 unknown [Lycopersicon esculentum]	1.0E-56	[16..232]	[15..225]
PX11A_CANBO - Peroxisomal membrane protein PMP30A OS=Candida boidinii GN=PEX11A PE=1 SV=1	9.0E-51	[1..236]	[1..254]
PEX11A - peroxisomal biogenesis factor 11 alpha gi\|157928610, gi... - gi\|60823999\|gb\|AAX36664.1\| peroxisomal biogenesis factor 11A [synthetic construct], gi\|157928610\|gb\|...	1.0E-50	[13..229]	[2..234]
PX11C_MOUSE - Peroxisomal membrane protein 11C OS=Mus musculus GN=Pex11g PE=1 SV=2	1.0E-49	[14..231]	[6..228]
PX11A_RAT - Peroxisomal membrane protein 11A OS=Rattus norvegicus GN=Pex11a PE=1 SV=1	3.0E-49	[13..229]	[2..233]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCDTLVYHP SVTRFVKFLD GSAGREKVLR LLQYLARFLA VQNSSLLARQ LQAQFTTVRK  60
   61 FLRFLKPLNH LQAAAKFYDN KLASDNVVRV CNVLKNIFFA AYLSLDQVNL LRILK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [116-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VIPVTVLTGK KIPRWSNWCW LFGLLSGLAM DLRKIQTSHA QIAAFVKAKS QSQGDEHEDH  60
   61 KKVLGKAYQD RYTALRRLFW DAADSFIVLN NLGYLSSNEE YVALSGVVTS ILGMQDMWKA 120
  121 T

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.887	0.066	peroxisomal membrane	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits