Protein: | PEX11 |
Organism: | Saccharomyces cerevisiae |
Length: | 236 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX11.
Description | E-value | Query Range |
Subject Range |
|
1.0E-65 | [1..236] | [1..236] |
|
2.0E-60 | [15..232] | [15..226] |
|
3.0E-60 | [15..231] | [15..225] |
|
1.0E-56 | [16..232] | [15..225] |
|
9.0E-51 | [1..236] | [1..254] |
|
1.0E-50 | [13..229] | [2..234] |
|
1.0E-49 | [14..231] | [6..228] |
|
3.0E-49 | [13..229] | [2..233] |
Region A: Residues: [1-115] |
1 11 21 31 41 51 | | | | | | 1 MVCDTLVYHP SVTRFVKFLD GSAGREKVLR LLQYLARFLA VQNSSLLARQ LQAQFTTVRK 60 61 FLRFLKPLNH LQAAAKFYDN KLASDNVVRV CNVLKNIFFA AYLSLDQVNL LRILK |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.620 | a.24.3 | Cytochromes |
View | Download | 0.728 | a.2.7 | tRNA-binding arm |
View | Download | 0.661 | f.17.1 | F1F0 ATP synthase subunit C |
View | Download | 0.651 | a.2.7 | tRNA-binding arm |
View | Download | 0.608 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
View | Download | 0.581 | f.18.1 | F1F0 ATP synthase subunit A |
View | Download | 0.574 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
View | Download | 0.568 | a.7.1 | Spectrin repeat |
View | Download | 0.566 | d.67.3 | Ribosome recycling factor, RRF |
View | Download | 0.550 | f.17.2 | Cytochrome c oxidase subunit II-like, transmembrane region |
View | Download | 0.538 | a.47.2 | t-snare proteins |
View | Download | 0.534 | a.47.2 | t-snare proteins |
View | Download | 0.534 | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
View | Download | 0.529 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
View | Download | 0.520 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
View | Download | 0.498 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
View | Download | 0.489 | a.7.1 | Spectrin repeat |
View | Download | 0.480 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
View | Download | 0.462 | a.7.1 | Spectrin repeat |
View | Download | 0.453 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
View | Download | 0.448 | f.14.1 | Voltage-gated potassium channels |
View | Download | 0.446 | a.7.1 | Spectrin repeat |
View | Download | 0.444 | a.47.2 | t-snare proteins |
View | Download | 0.441 | a.112.1 | Description not found. |
View | Download | 0.438 | f.14.1 | Voltage-gated potassium channels |
View | Download | 0.435 | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.426 | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.425 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
View | Download | 0.424 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
View | Download | 0.418 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
View | Download | 0.409 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
View | Download | 0.407 | d.67.3 | Ribosome recycling factor, RRF |
View | Download | 0.397 | a.7.1 | Spectrin repeat |
View | Download | 0.391 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
View | Download | 0.390 | a.2.7 | tRNA-binding arm |
View | Download | 0.389 | a.7.1 | Spectrin repeat |
View | Download | 0.380 | a.24.17 | Group V grass pollen allergen |
View | Download | 0.374 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.360 | a.7.8 | GAT domain |
View | Download | 0.357 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
View | Download | 0.356 | a.77.1 | DEATH domain |
View | Download | 0.355 | e.37.1 | Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains |
View | Download | 0.353 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
View | Download | 0.352 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
View | Download | 0.352 | a.24.3 | Cytochromes |
View | Download | 0.350 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
View | Download | 0.347 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
View | Download | 0.336 | b.88.1 | Mss4-like |
View | Download | 0.334 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
View | Download | 0.331 | a.24.17 | Group V grass pollen allergen |
View | Download | 0.330 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
View | Download | 0.325 | a.90.1 | Transcription factor STAT-4 N-domain |
View | Download | 0.325 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
View | Download | 0.322 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
View | Download | 0.321 | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.320 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
View | Download | 0.320 | a.1.1 | Globin-like |
View | Download | 0.317 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
View | Download | 0.313 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
View | Download | 0.311 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
View | Download | 0.309 | f.15.1 | Small-conductance potassium channel |
View | Download | 0.308 | a.24.17 | Group V grass pollen allergen |
View | Download | 0.303 | a.61.1 | Retroviral matrix proteins |
View | Download | 0.302 | a.24.4 | Hemerythrin |
View | Download | 0.302 | a.75.1 | Ribosomal protein S7 |
View | Download | 0.301 | a.24.14 | FAT domain of focal adhesion kinase |
View | Download | 0.300 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
View | Download | 0.298 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
View | Download | 0.298 | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.293 | a.57.1 | Protein HNS-dependent expression A; HdeA |
View | Download | 0.292 | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.291 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
View | Download | 0.289 | f.14.1 | Voltage-gated potassium channels |
View | Download | 0.285 | f.13.1 | Family A G protein-coupled receptor-like |
View | Download | 0.281 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
View | Download | 0.281 | a.7.5 | Tubulin chaperone cofactor A |
View | Download | 0.276 | a.7.1 | Spectrin repeat |
View | Download | 0.274 | a.118.11 | Cytochrome c oxidase subunit E |
View | Download | 0.271 | a.24.3 | Cytochromes |
View | Download | 0.267 | a.61.1 | Retroviral matrix proteins |
View | Download | 0.266 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
View | Download | 0.266 | a.118.11 | Cytochrome c oxidase subunit E |
View | Download | 0.265 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.263 | a.24.4 | Hemerythrin |
View | Download | 0.262 | a.74.1 | Cyclin-like |
View | Download | 0.261 | d.20.1 | UBC-like |
View | Download | 0.258 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.258 | f.17.2 | Cytochrome c oxidase subunit II-like, transmembrane region |
View | Download | 0.257 | a.7.5 | Tubulin chaperone cofactor A |
View | Download | 0.252 | f.31.1 | Photosystem I reaction center subunit XI, PsaL |
View | Download | 0.251 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
View | Download | 0.251 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
View | Download | 0.251 | a.24.17 | Group V grass pollen allergen |
View | Download | 0.249 | a.39.2 | Insect pheromon/odorant-binding proteins |
View | Download | 0.247 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
View | Download | 0.247 | a.1.1 | Globin-like |
View | Download | 0.247 | f.14.1 | Voltage-gated potassium channels |
View | Download | 0.247 | a.7.1 | Spectrin repeat |
View | Download | 0.244 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.244 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
View | Download | 0.243 | d.67.3 | Ribosome recycling factor, RRF |
View | Download | 0.242 | f.23.16 | Subunit III of photosystem I reaction centre, PsaF |
View | Download | 0.239 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
View | Download | 0.239 | a.118.11 | Cytochrome c oxidase subunit E |
View | Download | 0.238 | d.227.1 | OsmC-like |
View | Download | 0.238 | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
View | Download | 0.238 | a.130.1 | Chorismate mutase II |
View | Download | 0.237 | e.20.1 | Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment |
View | Download | 0.234 | d.67.3 | Ribosome recycling factor, RRF |
View | Download | 0.234 | a.7.1 | Spectrin repeat |
View | Download | 0.232 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
View | Download | 0.232 | a.39.1 | EF-hand |
View | Download | 0.231 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.231 | f.17.1 | F1F0 ATP synthase subunit C |
View | Download | 0.231 | f.17.1 | F1F0 ATP synthase subunit C |
View | Download | 0.229 | a.22.1 | Histone-fold |
View | Download | 0.226 | f.31.1 | Photosystem I reaction center subunit XI, PsaL |
View | Download | 0.225 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
View | Download | 0.224 | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.223 | a.2.7 | tRNA-binding arm |
View | Download | 0.223 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.222 | a.26.1 | 4-helical cytokines |
View | Download | 0.222 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
View | Download | 0.220 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
View | Download | 0.219 | a.24.17 | Group V grass pollen allergen |
View | Download | 0.218 | a.7.1 | Spectrin repeat |
View | Download | 0.218 | a.35.1 | lambda repressor-like DNA-binding domains |
View | Download | 0.217 | f.14.1 | Voltage-gated potassium channels |
View | Download | 0.217 | a.79.1 | Antitermination factor NusB |
View | Download | 0.216 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.216 | d.202.1 | Transcription factor NusA, N-terminal domain |
View | Download | 0.214 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.213 | a.24.17 | Group V grass pollen allergen |
View | Download | 0.213 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
View | Download | 0.210 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.208 | a.7.1 | Spectrin repeat |
View | Download | 0.208 | a.118.11 | Cytochrome c oxidase subunit E |
View | Download | 0.208 | f.17.1 | F1F0 ATP synthase subunit C |
View | Download | 0.208 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
View | Download | 0.207 | i.11.1 | Computational models partly based on NMR data |
View | Download | 0.206 | c.51.1 | Anticodon-binding domain of Class II aaRS |
View | Download | 0.205 | a.2.5 | Prefoldin |
View | Download | 0.204 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.203 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
View | Download | 0.202 | a.26.1 | 4-helical cytokines |
Region A: Residues: [116-236] |
1 11 21 31 41 51 | | | | | | 1 VIPVTVLTGK KIPRWSNWCW LFGLLSGLAM DLRKIQTSHA QIAAFVKAKS QSQGDEHEDH 60 61 KKVLGKAYQD RYTALRRLFW DAADSFIVLN NLGYLSSNEE YVALSGVVTS ILGMQDMWKA 120 121 T |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.547 | 0.068 | peroxisomal membrane | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
View | Download | 0.887 | 0.066 | peroxisomal membrane | a.47.2 | t-snare proteins |
View | Download | 0.663 | 0.041 | peroxisomal membrane | d.67.3 | Ribosome recycling factor, RRF |
View | Download | 0.844 | 0.021 | peroxisomal membrane | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
View | Download | 0.521 | N/A | N/A | a.24.3 | Cytochromes |
View | Download | 0.518 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
View | Download | 0.514 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.506 | N/A | N/A | a.24.1 | Apolipoprotein |
View | Download | 0.459 | N/A | N/A | i.11.1 | Computational models partly based on NMR data |
View | Download | 0.452 | N/A | N/A | a.1.1 | Globin-like |
View | Download | 0.424 | N/A | N/A | a.47.2 | t-snare proteins |
View | Download | 0.404 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
View | Download | 0.404 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
View | Download | 0.402 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
View | Download | 0.398 | N/A | N/A | a.2.7 | tRNA-binding arm |
View | Download | 0.365 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
View | Download | 0.360 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
View | Download | 0.357 | N/A | N/A | a.2.5 | Prefoldin |
View | Download | 0.353 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.343 | N/A | N/A | a.25.1 | Ferritin-like |
View | Download | 0.341 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.331 | N/A | N/A | a.24.4 | Hemerythrin |
View | Download | 0.331 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
View | Download | 0.326 | N/A | N/A | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
View | Download | 0.325 | N/A | N/A | d.110.4 | SNARE-like |
View | Download | 0.321 | N/A | N/A | a.7.1 | Spectrin repeat |
View | Download | 0.320 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
View | Download | 0.317 | N/A | N/A | a.7.1 | Spectrin repeat |
View | Download | 0.314 | N/A | N/A | a.130.1 | Chorismate mutase II |
View | Download | 0.314 | N/A | N/A | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
View | Download | 0.314 | N/A | N/A | a.47.2 | t-snare proteins |
View | Download | 0.300 | N/A | N/A | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
View | Download | 0.298 | N/A | N/A | a.25.1 | Ferritin-like |
View | Download | 0.298 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
View | Download | 0.294 | N/A | N/A | a.29.2 | Bromodomain |
View | Download | 0.290 | N/A | N/A | a.22.1 | Histone-fold |
View | Download | 0.289 | N/A | N/A | d.110.4 | SNARE-like |
View | Download | 0.282 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.282 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
View | Download | 0.280 | N/A | N/A | a.7.7 | BAG domain |
View | Download | 0.279 | N/A | N/A | a.7.1 | Spectrin repeat |
View | Download | 0.278 | N/A | N/A | a.19.1 | Fertilization protein |
View | Download | 0.275 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.274 | N/A | N/A | a.2.5 | Prefoldin |
View | Download | 0.274 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
View | Download | 0.274 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
View | Download | 0.273 | N/A | N/A | a.7.1 | Spectrin repeat |
View | Download | 0.269 | N/A | N/A | d.41.2 | Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain |
View | Download | 0.268 | N/A | N/A | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
View | Download | 0.266 | N/A | N/A | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
View | Download | 0.262 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
View | Download | 0.249 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
View | Download | 0.247 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.244 | N/A | N/A | a.7.4 | Smac/diablo |
View | Download | 0.244 | N/A | N/A | a.7.7 | BAG domain |
View | Download | 0.243 | N/A | N/A | a.63.1 | Apolipophorin-III |
View | Download | 0.243 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
View | Download | 0.242 | N/A | N/A | a.2.7 | tRNA-binding arm |
View | Download | 0.240 | N/A | N/A | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
View | Download | 0.240 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
View | Download | 0.240 | N/A | N/A | a.72.1 | Functional domain of the splicing factor Prp18 |
View | Download | 0.236 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.235 | N/A | N/A | a.1.1 | Globin-like |
View | Download | 0.235 | N/A | N/A | a.1.1 | Globin-like |
View | Download | 0.234 | N/A | N/A | a.48.1 | N-terminal domain of cbl (N-cbl) |
View | Download | 0.233 | N/A | N/A | d.185.1 | LuxS/MPP-like metallohydrolase |
View | Download | 0.232 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.232 | N/A | N/A | a.24.14 | FAT domain of focal adhesion kinase |
View | Download | 0.226 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
View | Download | 0.226 | N/A | N/A | f.31.1 | Photosystem I reaction center subunit XI, PsaL |
View | Download | 0.224 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
View | Download | 0.223 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
View | Download | 0.221 | N/A | N/A | a.72.1 | Functional domain of the splicing factor Prp18 |
View | Download | 0.220 | N/A | N/A | a.47.2 | t-snare proteins |
View | Download | 0.219 | N/A | N/A | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
View | Download | 0.217 | N/A | N/A | a.24.14 | FAT domain of focal adhesion kinase |
View | Download | 0.217 | N/A | N/A | a.48.1 | N-terminal domain of cbl (N-cbl) |
View | Download | 0.216 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.214 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
View | Download | 0.214 | N/A | N/A | a.19.1 | Fertilization protein |
View | Download | 0.211 | N/A | N/A | a.74.1 | Cyclin-like |
View | Download | 0.211 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.209 | N/A | N/A | a.1.1 | Globin-like |
View | Download | 0.207 | N/A | N/A | i.11.1 | Computational models partly based on NMR data |
View | Download | 0.207 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
View | Download | 0.206 | N/A | N/A | d.80.1 | Tautomerase/MIF |
View | Download | 0.206 | N/A | N/A | f.31.1 | Photosystem I reaction center subunit XI, PsaL |
View | Download | 0.204 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
View | Download | 0.201 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
View | Download | 0.201 | N/A | N/A | a.24.3 | Cytochromes |
View | Download | 0.201 | N/A | N/A | a.7.1 | Spectrin repeat |
View | Download | 0.200 | N/A | N/A | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |