Protein: | TRM11 |
Organism: | Saccharomyces cerevisiae |
Length: | 433 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRM11.
Description | E-value | Query Range |
Subject Range |
|
5.0E-79 | [1..430] | [7..445] |
|
7.0E-76 | [1..433] | [1..433] |
|
7.0E-61 | [2..429] | [1..437] |
|
3.0E-57 | [1..430] | [1..427] |
|
8.0E-54 | [1..428] | [1..451] |
|
8.0E-45 | [1..416] | [1..417] |
|
2.0E-43 | [1..245] | [7..251] |
|
1.0E-42 | [18..416] | [7..411] |
Region A: Residues: [1-112] |
1 11 21 31 41 51 | | | | | | 1 MKKYLLYMVQ VHLNFRRAEL ESLADLYNLS IDFSQYDANS PFFIVELEND QQAKDWIKRS 60 61 ILTRGIYEYW GQGTTLDELH KDIQRQSNFE QDLQLKFKHS TFKFEFECYK GN |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [113-191] |
1 11 21 31 41 51 | | | | | | 1 SKAKRVEQIE TFRYLGFEGK IDMKHPQEVF TVIEEYTPIS ENVGGKTPTR IYFGRQVQMS 60 61 NRSAMEKYDL KKRPYKGTT |
Detection Method: | |
Confidence: | 8.69897 |
Match: | 1g60A_ |
Description: | Methyltransferase mboII |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [192-433] |
1 11 21 31 41 51 | | | | | | 1 SFEAELSLVS ANIAQVKPGT IMYDPFAGTG SFLVAGGHFG SLVIGSDIDG RMIRGKGAQV 60 61 NISANFKKYG ESSQFLDVLT MDFTNNALRN NLVIDTILCD PPYGIRESIK VLGAKDPERF 120 121 LGKEDMEIDG EKAYLRRDYI PTKKPYALDS LLDDLLQYSS ERLPIGGRLA FWMPTANDAN 180 181 IETIVPMHEN LELKYNCVQE FNKWSRRLLV YINRGSTFNG SSNHGIKRSK DNFRERYFNN 240 241 FN |
Detection Method: | |
Confidence: | 22.0 |
Match: | 2admA_ |
Description: | DNA methylase TaqI |
Matching Structure (courtesy of the PDB): |