| Protein: | TRM11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 433 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRM11.
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-79 | [1..430] | [7..445] |
|
|
7.0E-76 | [1..433] | [1..433] |
|
|
7.0E-61 | [2..429] | [1..437] |
|
|
3.0E-57 | [1..430] | [1..427] |
|
|
8.0E-54 | [1..428] | [1..451] |
|
|
8.0E-45 | [1..416] | [1..417] |
|
|
2.0E-43 | [1..245] | [7..251] |
|
|
1.0E-42 | [18..416] | [7..411] |
|
Region A: Residues: [1-112] |
1 11 21 31 41 51
| | | | | |
1 MKKYLLYMVQ VHLNFRRAEL ESLADLYNLS IDFSQYDANS PFFIVELEND QQAKDWIKRS 60
61 ILTRGIYEYW GQGTTLDELH KDIQRQSNFE QDLQLKFKHS TFKFEFECYK GN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.678 | d.93.1 | SH2 domain |
| View | Download | 0.610 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.504 | b.23.1 | Spermadhesin, CUB domain |
| View | Download | 0.615 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.566 | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.447 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.439 | a.4.1 | Homeodomain-like |
| View | Download | 0.410 | d.110.4 | SNARE-like |
| View | Download | 0.409 | a.7.7 | BAG domain |
| View | Download | 0.407 | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.390 | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.388 | d.185.1 | LuxS/MPP-like metallohydrolase |
| View | Download | 0.388 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.380 | d.146.1 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |
| View | Download | 0.365 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.357 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.353 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.337 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.331 | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.330 | a.118.1 | ARM repeat |
| View | Download | 0.328 | a.39.1 | EF-hand |
| View | Download | 0.321 | d.38.1 | Thioesterase/thiol ester dehydrase-isomerase |
| View | Download | 0.308 | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.307 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.300 | d.38.1 | Thioesterase/thiol ester dehydrase-isomerase |
| View | Download | 0.298 | d.58.35 | Pseudouridine synthase |
| View | Download | 0.296 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.288 | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.285 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.281 | a.26.1 | 4-helical cytokines |
| View | Download | 0.275 | a.47.2 | t-snare proteins |
| View | Download | 0.274 | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.271 | a.24.3 | Cytochromes |
| View | Download | 0.242 | d.58.47 | Hypothetical protein VC0424 |
| View | Download | 0.236 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.234 | d.208.1 | MTH1598-like |
| View | Download | 0.226 | b.2.4 | Alpha-macroglobulin receptor domain |
| View | Download | 0.224 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.219 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.217 | a.26.1 | 4-helical cytokines |
| View | Download | 0.213 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.212 | b.1.18 | E set domains |
| View | Download | 0.209 | d.58.17 | Metal-binding domain |
| View | Download | 0.204 | a.64.1 | Saposin |
|
Region A: Residues: [113-191] |
1 11 21 31 41 51
| | | | | |
1 SKAKRVEQIE TFRYLGFEGK IDMKHPQEVF TVIEEYTPIS ENVGGKTPTR IYFGRQVQMS 60
61 NRSAMEKYDL KKRPYKGTT
|
| Detection Method: | |
| Confidence: | 8.69897 |
| Match: | 1g60A_ |
| Description: | Methyltransferase mboII |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [192-433] |
1 11 21 31 41 51
| | | | | |
1 SFEAELSLVS ANIAQVKPGT IMYDPFAGTG SFLVAGGHFG SLVIGSDIDG RMIRGKGAQV 60
61 NISANFKKYG ESSQFLDVLT MDFTNNALRN NLVIDTILCD PPYGIRESIK VLGAKDPERF 120
121 LGKEDMEIDG EKAYLRRDYI PTKKPYALDS LLDDLLQYSS ERLPIGGRLA FWMPTANDAN 180
181 IETIVPMHEN LELKYNCVQE FNKWSRRLLV YINRGSTFNG SSNHGIKRSK DNFRERYFNN 240
241 FN
|
| Detection Method: | |
| Confidence: | 22.0 |
| Match: | 2admA_ |
| Description: | DNA methylase TaqI |
Matching Structure (courtesy of the PDB): |
|
