| Protein: | MSB4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 492 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSB4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..492] | [1..492] |
|
|
2.0E-73 | [7..490] | [392..819] |
|
|
3.0E-68 | [27..490] | [427..841] |
|
|
1.0E-67 | [16..491] | [620..1095] |
|
Region A: Residues: [1-91] |
1 11 21 31 41 51
| | | | | |
1 MIMSSTMSTE AALVPNESVF DTVSSFNEDD ANYSVLDLYD DDDEGDDSST VERKEILTTR 60
61 ELEKAKAFTS LIMADPENFD RYGFSKKGYF I
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [92-281] |
1 11 21 31 41 51
| | | | | |
1 SQEEYDKWWT EYNRYTERRK KKWENFLLKN KIELHNDNPL VYPARTDELS KFVRKGIPAE 60
61 WRGNAWWYFA GGQRQLDANV GVYDRLKSDC REGAVSGKDM EAIERDLYRT FPDNIHFHKE 120
121 SFQNGEPAII RSLRRVLMAF SVYDKTIGYC QSMNFLVGLL LLFMEEEKAF WMLVIITGKY 180
181 LPGVYESDLE
|
|
Region B: Residues: [358-431] |
1 11 21 31 41 51
| | | | | |
1 RIWDCLFYEE SHFLFKVALG ILKLSESEFL ESKSQKLFRQ YSSYTFGGSN DSDSTFKRLK 60
61 NKIKTQEEAD MEIL
|
| Detection Method: | |
| Confidence: | 34.69897 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [282-357] |
1 11 21 31 41 51
| | | | | |
1 GANVDQGVLV LCIKEYLPEI WSHIESSYMN GNGSTDQISG PASGEEYLCR LPTLTLCTAS 60
61 WFMSCFVGVV PIETTL
|
| Detection Method: | |
| Confidence: | 34.69897 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [432-492] |
1 11 21 31 41 51
| | | | | |
1 QVIQNFPKRL LNPNDIFEKV LMKKKVALNG ITQEKIDRGR EYVAMARNRQ RASSRPKERR 60
61 K
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
