| Protein: | MSB4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 492 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSB4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..492] | [1..492] |
|
|
2.0E-73 | [7..490] | [392..819] |
|
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3.0E-68 | [27..490] | [427..841] |
|
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1.0E-67 | [16..491] | [620..1095] |
|
Region A: Residues: [1-91] |
1 11 21 31 41 51
| | | | | |
1 MIMSSTMSTE AALVPNESVF DTVSSFNEDD ANYSVLDLYD DDDEGDDSST VERKEILTTR 60
61 ELEKAKAFTS LIMADPENFD RYGFSKKGYF I
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.280 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.243 | a.22.1 | Histone-fold |
| View | Download | 0.237 | a.74.1 | Cyclin-like |
| View | Download | 0.299 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.252 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.235 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.223 | c.26.2 | Adenine nucleotide alpha hydrolases-like |
| View | Download | 0.220 | a.41.1 | Domain of poly(ADP-ribose) polymerase |
| View | Download | 0.219 | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.211 | d.6.1 | Prion-like |
| View | Download | 0.200 | a.118.1 | ARM repeat |
|
Region A: Residues: [92-281] |
1 11 21 31 41 51
| | | | | |
1 SQEEYDKWWT EYNRYTERRK KKWENFLLKN KIELHNDNPL VYPARTDELS KFVRKGIPAE 60
61 WRGNAWWYFA GGQRQLDANV GVYDRLKSDC REGAVSGKDM EAIERDLYRT FPDNIHFHKE 120
121 SFQNGEPAII RSLRRVLMAF SVYDKTIGYC QSMNFLVGLL LLFMEEEKAF WMLVIITGKY 180
181 LPGVYESDLE
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|
Region B: Residues: [358-431] |
1 11 21 31 41 51
| | | | | |
1 RIWDCLFYEE SHFLFKVALG ILKLSESEFL ESKSQKLFRQ YSSYTFGGSN DSDSTFKRLK 60
61 NKIKTQEEAD MEIL
|
| Detection Method: | |
| Confidence: | 34.69897 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [282-357] |
1 11 21 31 41 51
| | | | | |
1 GANVDQGVLV LCIKEYLPEI WSHIESSYMN GNGSTDQISG PASGEEYLCR LPTLTLCTAS 60
61 WFMSCFVGVV PIETTL
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| Detection Method: | |
| Confidence: | 34.69897 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [432-492] |
1 11 21 31 41 51
| | | | | |
1 QVIQNFPKRL LNPNDIFEKV LMKKKVALNG ITQEKIDRGR EYVAMARNRQ RASSRPKERR 60
61 K
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.299 | 0.420 | Rab GTPase activator activity | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.299 | 0.054 | Rab GTPase activator activity | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.575 | 0.024 | Rab GTPase activator activity | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.339 | 0.014 | Rab GTPase activator activity | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.304 | N/A | N/A | g.58.1 | Pheromone ER-23 |
| View | Download | 0.282 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.267 | N/A | N/A | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.266 | N/A | N/A | g.57.1 | Serine proteinase inhibitor lekti |
| View | Download | 0.261 | N/A | N/A | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.260 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.258 | N/A | N/A | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.257 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.247 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.233 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.218 | N/A | N/A | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.207 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.207 | N/A | N/A | d.34.1 | DNA-binding domain of Mlu1-box binding protein MBP1 |
