| Protein: | DUF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1116 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DUF1.
| Description | E-value | Query Range |
Subject Range |
|
|
744.0 | [0..1] | [1100..1] |
|
|
606.0 | [0..8] | [620..891] |
|
|
598.0 | [0..2] | [620..758] |
|
|
591.0 | [0..15] | [611..1164] |
|
|
585.0 | [0..12] | [611..1033] |
|
|
569.0 | [0..13] | [575..943] |
|
|
564.0 | [0..34] | [630..577] |
|
Region A: Residues: [1-338] |
1 11 21 31 41 51
| | | | | |
1 MNQLTVSYGL ISPDYCTSQD AHILPITKIL YPDIPGKNYF LTSGRDGSII LHKNTQLSNE 60
61 PETAATTIKN DAIRMQVHSD WASDLIHVNM KNSDPSAGDT FISVSHDFSI VLISVNAQLT 120
121 TWDKKIIGDH DDYIKCIVPI HYEMSNDYEL EEQEGGPDNV HDGINNGIVV DEQNNFLFVT 180
181 GGLDRKIKLW CLSSGPEKMA TLLHTFDNAQ SNDTGSIYSM SPIIPKYSFD DNQTSRPFDF 240
241 VAGDCNGDLI FYSCKYRKEV IRIQNAHRTN IKVVRTLDDS TRLISTSSDG VINVWDLNCR 300
301 HDQTTGALQL PKKIGSWSWD SSIWCVQGTS LDKLYFGD
|
| Detection Method: |  |
| Confidence: | 73.0 |
| Match: | 1gg2B |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [339-469] |
1 11 21 31 41 51
| | | | | |
1 SQGNVMRANL SSYEDAKLTR IFKPDHHHHH HHHHEHEEQN ISTTDAKVKK YGGILDIALL 60
61 PNEKLLFSFC TDSNLNVLDL TNNHFSVNEG GFALTRSSLL TNRRHVITEN TKGQMQRWDI 120
121 VSCELLNTFD S
|
| Detection Method: | |
| Confidence: | 62.69897 |
| Match: | 1erjA |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [470-837] |
1 11 21 31 41 51
| | | | | |
1 SEGSFDDIVM KYTSKEILSH WCTVSVKVGM LFVKINPKFL KTEVYGSALK DYQVVNNIEI 60
61 NSDERYNLGK IVINSLFNEF ISYEVQKDKL LRKKIFSLKK KDLTNSLTLD TGYNSESKKN 120
121 NKDKKRKSTF KISSTLSIGN TNSSGTPPNS APATPVMAET IVLEEQPLLQ SASDKAIDDS 180
181 LELVQPLPAS KKPYFRTQSS GSLLSRKFKS FRSTSGRATT GLNTPEEPKG ILPDTPHVIN 240
241 DDSAFPQAIN TTQQSKDATP ESMLWNHPFK LEQKLSAISS QDLPSNNTHN KLRSSENSRA 300
301 NSTSTLEGNE KKKPEFMPDL LEQIQESYKQ QYMNTSSLKY LTKRLPVTKI IKASSCPIIR 360
361 VKSATLVL
|
| Detection Method: | |
| Confidence: | 11.54 |
| Match: | |
| Description: | No description for 1i3qA was found. |
|
Region A: Residues: [838-948] |
1 11 21 31 41 51
| | | | | |
1 VHLWKEGSCG GRVLFSTLLP PSHVDNETVS GGKENSKPPD DEEVDLQAVD DDKLGKYDLI 60
61 DGELGSRLNR RQIFEQLEEN LPYWFAKALF RDIKTVEEQP KLNFLIMPWS S
|
| Detection Method: | |
| Confidence: | 10.72 |
| Match: | |
| Description: | No description for 1m2vB was found. |
|
Region A: Residues: [949-1116] |
1 11 21 31 41 51
| | | | | |
1 VGGSEAAGNE NKKKFISASD TTESSGNDSS DSSLGNGNEA VSPSTQQQFH NMLKFGRPKT 60
61 SEQELNPTDL PRISEANVKL VAPGMIRVKK IKLYVADRFE TKTPEMKAKM EPSLWLDLLC 120
121 RGQVLDNDMT LNTVRTLYWK SQGDIVLEYR RKVHNSPLVH EVNGNEGK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
