YRC Public Data Repository - Protein Structure Prediction

Protein:	YOL086W-A
Organism:	Saccharomyces cerevisiae
Length:	90 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOL086W-A.

Description	E-value	Query Range	Subject Range
CENPS_MOUSE - Centromere protein S OS=Mus musculus GN=Apitd1 PE=2 SV=1	6.0E-25	[2..90]	[10..98]
YOL086W-A - Putative protein of unknown function; mutant in a srs2 mutant background displays MMS hypersensitivi... MHF1_YEAST - MHF histone-fold complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MHF1 ...	1.0E-23	[1..90]	[1..90]
gi\|85102562 - gi\|85102562\|ref\|XP_961356.1\| hypothetical protein ( (AL513444) conserved hypothetical protein [Neuro... gi\|12718388, gi\|... - gi\|32404636\|ref\|XP_322931.1\| hypothetical protein ( (AL513444) conserved hypothetical protein [Neuro...	7.0E-23	[3..89]	[7..93]
gi\|9758240, gi\|1... - gi\|9758240\|dbj\|BAB08739.1\| unnamed protein product [Arabidopsis thaliana], gi\|15241317\|ref\|NP_199906...	4.0E-22	[1..83]	[115..197]
CE25310 - status:Partially_confirmed UniProt:Q9TW55 protein_id:CAB61044.1	1.0E-21	[3..85]	[32..121]
gi\|13097291 - gi\|13097291\|gb\|AAH03400.1\| TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor,...	2.0E-17	[24..76]	[21..74]
TAF9_RAT - (Q62880) Transcription initiation factor TFIID subunit 9 (Transcription initiation factor TFIID 31 k...	6.0E-17	[24..76]	[16..69]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDDEDRAQL KARLWIRVEE RLQQVLSSED IKYTPRFINS LLELAYLQLG EMGSDLQAFA  60
   61 RHAGRGVVNK SDLMLYLRKQ PDLQERVTQE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.927	a.58.1	Chemotaxis receptor methyltransferase CheR, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits