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View Structure Prediction Details

Protein: YOL086W-A
Organism: Saccharomyces cerevisiae
Length: 90 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOL086W-A.

Description E-value Query
Range
Subject
Range
CENPS_MOUSE - Centromere protein S OS=Mus musculus GN=Apitd1 PE=2 SV=1
6.0E-25 [2..90] [10..98]
YOL086W-A - Putative protein of unknown function; mutant in a srs2 mutant background displays MMS hypersensitivi...
MHF1_YEAST - MHF histone-fold complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MHF1 ...
1.0E-23 [1..90] [1..90]
gi|85102562 - gi|85102562|ref|XP_961356.1| hypothetical protein ( (AL513444) conserved hypothetical protein [Neuro...
gi|12718388, gi|... - gi|32404636|ref|XP_322931.1| hypothetical protein ( (AL513444) conserved hypothetical protein [Neuro...
7.0E-23 [3..89] [7..93]
gi|9758240, gi|1... - gi|9758240|dbj|BAB08739.1| unnamed protein product [Arabidopsis thaliana], gi|15241317|ref|NP_199906...
4.0E-22 [1..83] [115..197]
CE25310 - status:Partially_confirmed UniProt:Q9TW55 protein_id:CAB61044.1
1.0E-21 [3..85] [32..121]
gi|13097291 - gi|13097291|gb|AAH03400.1| TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor,...
2.0E-17 [24..76] [21..74]
TAF9_RAT - (Q62880) Transcription initiation factor TFIID subunit 9 (Transcription initiation factor TFIID 31 k...
6.0E-17 [24..76] [16..69]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDDEDRAQL KARLWIRVEE RLQQVLSSED IKYTPRFINS LLELAYLQLG EMGSDLQAFA  60
   61 RHAGRGVVNK SDLMLYLRKQ PDLQERVTQE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.927 a.58.1 Chemotaxis receptor methyltransferase CheR, N-terminal domain
View Download 0.880 a.22.1 Histone-fold
View Download 0.737 a.4.1 Homeodomain-like
View Download 0.625 a.177.1 Sigma2 domain of RNA polymerase sigma factors
View Download 0.604 a.112.1 Description not found.
View Download 0.580 a.23.4 Mitochondrial import receptor subunit Tom20
View Download 0.561 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.542 a.22.1 Histone-fold
View Download 0.538 a.179.1 Replisome organizer (g39p helicase loader/inhibitor protein)
View Download 0.513 a.19.1 Fertilization protein
View Download 0.503 a.7.6 Ribosomal protein S20
View Download 0.479 a.174.1 Double Clp-N motif
View Download 0.471 a.60.5 Barrier-to-autointegration factor, BAF
View Download 0.466 a.19.1 Fertilization protein
View Download 0.462 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.451 a.69.3 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
View Download 0.433 a.28.3 Retrovirus capsid protein C-terminal domain
View Download 0.431 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.419 a.28.1 ACP-like
View Download 0.418 f.13.1 Family A G protein-coupled receptor-like
View Download 0.417 a.142.1 PTS-regulatory domain, PRD
View Download 0.401 a.47.2 t-snare proteins
View Download 0.400 d.47.1 Ribosomal protein L11, N-terminal domain
View Download 0.394 d.39.1 Dynein light chain 8 (DLC8)
View Download 0.375 a.28.2 Colicin E immunity proteins
View Download 0.371 a.174.1 Double Clp-N motif
View Download 0.369 d.58.35 Pseudouridine synthase
View Download 0.364 a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.364 a.57.1 Protein HNS-dependent expression A; HdeA
View Download 0.359 a.61.1 Retroviral matrix proteins
View Download 0.355 a.6.1 Putative DNA-binding domain
View Download 0.349 f.34.1 Mechanosensitive channel protein MscS (YggB), transmembrane region
View Download 0.345 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.332 a.16.1 S15/NS1 RNA-binding domain
View Download 0.314 a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.310 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.307 a.39.1 EF-hand
View Download 0.304 a.181.1 Antibiotic binding domain of TipA-like multidrug resistance regulators
View Download 0.303 c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.301 a.7.3 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View Download 0.300 d.150.1 4'-phosphopantetheinyl transferase
View Download 0.299 d.8.1 Urease, gamma-subunit
View Download 0.294 a.144.1 PABC (PABP) domain
View Download 0.292 a.60.8 HRDC-like
View Download 0.290 a.74.1 Cyclin-like
View Download 0.290 a.24.11 Bacterial GAP domain
View Download 0.286 a.39.1 EF-hand
View Download 0.280 a.39.1 EF-hand
View Download 0.275 a.4.12 TrpR-like
View Download 0.275 a.26.1 4-helical cytokines
View Download 0.273 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.273 a.21.1 HMG-box
View Download 0.270 a.76.1 Iron-dependent represor protein, dimerization domain
View Download 0.269 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.269 a.74.1 Cyclin-like
View Download 0.263 d.58.19 Bacterial exopeptidase dimerisation domain
View Download 0.262 a.39.1 EF-hand
View Download 0.258 a.39.1 EF-hand
View Download 0.258 a.77.1 DEATH domain
View Download 0.255 d.52.7 Ribosome-binding factor A, RbfA
View Download 0.255 a.13.1 alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View Download 0.255 a.21.1 HMG-box
View Download 0.255 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.251 a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.244 a.4.5 "Winged helix" DNA-binding domain
View Download 0.244 a.4.5 "Winged helix" DNA-binding domain
View Download 0.241 a.69.1 C-terminal domain of alpha and beta subunits of F1 ATP synthase
View Download 0.240 a.144.1 PABC (PABP) domain
View Download 0.237 a.74.1 Cyclin-like
View Download 0.237 d.17.2 Copper amine oxidase, domains 1 and 2
View Download 0.236 a.5.6 Hypothetical protein MTH1615
View Download 0.233 f.35.1 Multidrug efflux transporter AcrB transmembrane domain
View Download 0.225 a.139.1 Type I dockerin domain
View Download 0.223 a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.222 a.39.1 EF-hand
View Download 0.220 a.11.2 Second domain of FERM
View Download 0.219 a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.218 f.16.1 Gated mechanosensitive channel
View Download 0.215 a.24.3 Cytochromes
View Download 0.213 a.21.1 HMG-box
View Download 0.212 d.96.1 Tetrahydrobiopterin biosynthesis enzymes-like
View Download 0.209 f.14.1 Voltage-gated potassium channels
View Download 0.208 f.31.1 Photosystem I reaction center subunit XI, PsaL
View Download 0.207 a.8.2 Plasmid maintenance system epsilon/zeta, antidote epsilon subunit
View Download 0.206 a.151.1 Glutamyl tRNA-reductase dimerization domain
View Download 0.206 a.25.1 Ferritin-like
View Download 0.205 a.24.9 alpha-catenin/vinculin
View Download 0.202 a.74.1 Cyclin-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle