| Protein: | PHM7 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 991 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHM7.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..991] | [1..991] |
|
|
0.0 | [8..792] | [5..765] |
|
Region A: Residues: [1-193] |
1 11 21 31 41 51
| | | | | |
1 MADSSSTSAF ISTLIIYGLT AVVFVWLFLL LRPKNRRVYE PRSLKDIQTI PEEERTEPVP 60
61 EGYFGWVEYL LSKPHSFLIQ HTSVDGYFLL RYIGIVGSLS FVGCLLLLPI LLPVNATNGN 120
121 NLQGFELLSF SNVTNKNRFY AHVFLSWIFF GLFTYVIYKE LYYYVVFRHA MQTTPLYDGL 180
181 LSSRTVIVTE LHK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [194-292] |
1 11 21 31 41 51
| | | | | |
1 SIAQEGEMQM RFPKASNVAF AYDLSDLQEL CKERAKNAAK YEAALNKVLN KCVKMTRNKT 60
61 QKQLDKLYNN GTKPKDDLET YVPHKKRPKH RLGKLPLCL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.722 | a.7.1 | Spectrin repeat |
| View | Download | 0.420 | a.47.2 | t-snare proteins |
| View | Download | 0.394 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.352 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.348 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.318 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.298 | a.7.1 | Spectrin repeat |
| View | Download | 0.295 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.290 | e.37.1 | Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains |
| View | Download | 0.287 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.283 | a.59.1 | PAH2 domain |
| View | Download | 0.281 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.251 | c.23.1 | CheY-like |
| View | Download | 0.248 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.219 | a.138.1 | Multiheme cytochromes |
| View | Download | 0.203 | c.47.1 | Thioredoxin-like |
| View | Download | 0.201 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| Term | Confidence | Notes |
| nucleic acid binding | 3.16043509094686 | bayes_pls_golite062009 |
| binding | 2.45816542782438 | bayes_pls_golite062009 |
| RNA binding | 2.12977287614929 | bayes_pls_golite062009 |
| protein binding | 1.45646458884073 | bayes_pls_golite062009 |
| transporter activity | 1.17508255371693 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.076425286008 | bayes_pls_golite062009 |
| mRNA binding | 1.01590992981116 | bayes_pls_golite062009 |
| ligase activity | 0.839455841912248 | bayes_pls_golite062009 |
| hydrolase activity | 0.651922400349676 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.550646307051285 | bayes_pls_golite062009 |
| transcription regulator activity | 0.502017879414539 | bayes_pls_golite062009 |
| DNA binding | 0.393909838101373 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.30461161014793 | bayes_pls_golite062009 |
|
Region A: Residues: [293-780] |
1 11 21 31 41 51
| | | | | |
1 GGKKVNTLSY SSKRIGELNE EIHEKQADWA SNDRQPACFI QFETQLEAQR CYQSVEAILG 60
61 KKNFGKRLIG YSPEDVNWGS MRLSSKERHS RRAVANTIMV LLIIFWAFPV AVVGIISNVN 120
121 FLTDKVPFLR FINNMPTFLM GVITGLLPTI ALVVLMSLVP PFIVMLGKLS GCVTRQETDL 180
181 YSQAWYYAFA VIQIFLVVTA TSSASSTVDS IIDRPRSAMT LLANNLPKAS NFYIMYFILK 240
241 GLTGPTWTIL QAVNLLLSKV LGRVLDSTPR QKWNRYNTLA TPRMGIVYPG IEILVCIYIC 300
301 YSIIAPILLF FSTVMLTLLY VAYLYNLNYV FGFSFDLKGR NYPRALFQIF VGIYLSEVCL 360
361 LGLFIMAKTW GPLVLEVFWI VVTALAHIYM KRKFIPLFDA VPLSAIRHAR GEPGYSYPTS 420
421 DLGLQEIKDI ADEMKGKYEQ DNTHGILTPV TKDDLKKANL IPDNDGSSEN GTPSNPFESG 480
481 SERASLSG
|
| Detection Method: | |
| Confidence: | 228.207608 |
| Match: | PF02714 |
| Description: | Domain of unknown function DUF221 |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [781-991] |
1 11 21 31 41 51
| | | | | |
1 SNAESDSIKK LNDTVIKKSS TLSSSTKDNN ESTFVPEGEK FRKFHYSDVE ALRNKRPYDE 60
61 DDHSKHGPEG AVPVNADAGV IYSDPAAVMK EPQAFPPDVL ETNTWTRRIL QFFNPRRSYP 120
121 FDSVRMRFPL VFNTSIEYDE EYLSSAYTDP CVREKDPIVW CCKDPLGVSK QQIQEARSNG 180
181 LDVRDDFTRY DEKGKVIFTY NPPDYEPEAK K
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [714-775] |
1 11 21 31 41 51
| | | | | |
1 LGLQEIKDIA DEMKGKYEQD NTHGILTPVT KDDLKKANLI PDNDGSSENG TPSNPFESGS 60
61 ER
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [776-832] |
1 11 21 31 41 51
| | | | | |
1 ASLSGSNAES DSIKKLNDTV IKKSSTLSSS TKDNNESTFV PEGEKFRKFH YSDVEAL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [833-991] |
1 11 21 31 41 51
| | | | | |
1 RNKRPYDEDD HSKHGPEGAV PVNADAGVIY SDPAAVMKEP QAFPPDVLET NTWTRRILQF 60
61 FNPRRSYPFD SVRMRFPLVF NTSIEYDEEY LSSAYTDPCV REKDPIVWCC KDPLGVSKQQ 120
121 IQEARSNGLD VRDDFTRYDE KGKVIFTYNP PDYEPEAKK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
