| Protein: | TLG2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 397 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TLG2.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-72 | [1..397] | [1..397] |
|
|
2.0E-52 | [72..339] | [1..258] |
|
|
8.0E-52 | [53..340] | [11..288] |
|
|
4.0E-51 | [53..340] | [8..285] |
|
|
3.0E-50 | [53..339] | [11..287] |
|
|
3.0E-50 | [53..340] | [11..288] |
|
Region A: Residues: [1-131] |
1 11 21 31 41 51
| | | | | |
1 MFRDRTNLFL SYRRTFPHNI TFSSGKAPLG DDQDIEMGTY PMMNMSHDIS ARLTDERKNK 60
61 HENHSDALPP IFIDIAQDVD DYLLEVRRLS EQLAKVYRKN SLPGFEDKSH DEALIEDLSF 120
121 KVIQMLQKCY A
|
| Detection Method: |  |
| Confidence: | 14.154902 |
| Match: | 1ez3A_ |
| Description: | Syntaxin 1A N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [132-203] |
1 11 21 31 41 51
| | | | | |
1 VMKRLKTIYN SQFVDGKQLS REELIILDNL QKIYAEKIQT ESNKFRVLQN NYLKFLNKDD 60
61 LKPIRNKASA EN
|
| Detection Method: | |
| Confidence: | 14.154902 |
| Match: | 1ez3A_ |
| Description: | Syntaxin 1A N-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNAP receptor activity | 3.50393203740159 | bayes_pls_golite062009 |
| protein transporter activity | 2.96543140800925 | bayes_pls_golite062009 |
| phosphatidic acid binding | 2.19104724611902 | bayes_pls_golite062009 |
| binding | 2.13344290488739 | bayes_pls_golite062009 |
| transporter activity | 1.74189664015129 | bayes_pls_golite062009 |
| protein binding | 1.51700626946713 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.49085442233849 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.13101548288086 | bayes_pls_golite062009 |
| excitatory extracellular ligand-gated ion channel activity | 0.86350507004267 | bayes_pls_golite062009 |
| extracellular ligand-gated ion channel activity | 0.86350507004267 | bayes_pls_golite062009 |
| SNARE binding | 0.71459772253941 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.643064875848901 | bayes_pls_golite062009 |
| gated channel activity | 0.621670335227137 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 0.41937155561589 | bayes_pls_golite062009 |
| ligand-gated channel activity | 0.41937155561589 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.370484918396857 | bayes_pls_golite062009 |
| channel activity | 0.0647076360772156 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.0647076360772156 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.0435980899803177 | bayes_pls_golite062009 |
| phospholipid binding | 0.0172309833091902 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.00476738027966683 | bayes_pls_golite062009 |
|
Region A: Residues: [204-345] |
1 11 21 31 41 51
| | | | | |
1 TLLLDDEEEE AAREKREGLD IEDYSKRTLQ RQQQLHDTSA EAYLRERDEE ITQLARGVLE 60
61 VSTIFREMQD LVVDQGTIVD RIDYNLENTV VELKSADKEL NKATHYQKRT QKCKVILLLT 120
121 LCVIALFFFV MLKPHGGGSG GR
|
| Detection Method: | |
| Confidence: | 61.325697 |
| Match: | 1jthB_ |
| Description: | Syntaxin 1A |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [346-397] |
1 11 21 31 41 51
| | | | | |
1 NNGSNKYNND DNKTVNNSHD DGSNTHINDE ESNLPSIVEV TESENDALDD LL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
