| Protein: | HRD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 551 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HRD1.
| Description | E-value | Query Range |
Subject Range |
|
|
325.0 | [0..9] | [404..3] |
|
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321.0 | [0..9] | [404..3] |
|
|
321.0 | [0..9] | [404..3] |
|
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319.0 | [0..9] | [404..3] |
|
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319.0 | [0..9] | [404..3] |
|
Region A: Residues: [1-221] |
1 11 21 31 41 51
| | | | | |
1 MVPENRRKQL AIFVVVTYLL TFYCVYSATK TSVSFLQVTL KLNEGFNLMV LSIFILLNST 60
61 LLWQLLTKLL FGELRLIEHE HIFERLPFTI INTLFMSSLF HERYFFTVAF FGLLLLYLKV 120
121 FHWILKDRLE ALLQSINDST TMKTLIFSRF SFNLVLLAVV DYQIITRCIS SIYTNQKSDI 180
181 ESTSLYLIQV MEFTMLLIDL LNLFLQTCLN FWEFYRSQQS L
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [222-344] |
1 11 21 31 41 51
| | | | | |
1 SNENNHIVHG DPTDENTVES DQSQPVLNDD DDDDDDDRQF TGLEGKFMYE KAIDVFTRFL 60
61 KTALHLSMLI PFRMPMMLLK DVVWDILALY QSGTSLWKIW RNNKQLDDTL VTVTVEQLQN 120
121 SAN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.587 | a.7.7 | BAG domain |
| View | Download | 0.531 | a.219.1 | Description not found. |
| View | Download | 0.528 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.528 | a.112.1 | Description not found. |
| View | Download | 0.423 | d.227.1 | OsmC-like |
| View | Download | 0.389 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.367 | a.62.1 | Hepatitis B viral capsid (hbcag) |
| View | Download | 0.365 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.337 | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
|
Region A: Residues: [345-432] |
1 11 21 31 41 51
| | | | | |
1 DDNICIICMD ELIHSPNQQT WKNKNKKPKR LPCGHILHLS CLKNWMERSQ TCPICRLPVF 60
61 DEKGNVVQTT FTSNSDITTQ TTVTDSTG
|
| Detection Method: | |
| Confidence: | 31.232149 |
| Match: | 1chcA |
| Description: | STRUCTURE OF THE C3HC4 DOMAIN BY 1H-NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; A NEW STRUCTURAL CLASS OF ZINC-FINGER |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [433-551] |
1 11 21 31 41 51
| | | | | |
1 IATDQQGFAN EVDLLPTRTT SPDIRIVPTQ NIDTLAMRTR STSTPSPTWY TFPLHKTGDN 60
61 SVGSSRSAYE FLITNSDEKE NGIPVKLTIE NHEVNSLHGD GGEQIAKKIV IPDKFIQHI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.470 | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.422 | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.334 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.319 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.319 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.285 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.255 | d.24.1 | Pili subunits |
| View | Download | 0.225 | d.93.1 | SH2 domain |
