Protein: | HRD1 |
Organism: | Saccharomyces cerevisiae |
Length: | 551 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HRD1.
Description | E-value | Query Range |
Subject Range |
|
325.0 | [0..9] | [404..3] |
|
321.0 | [0..9] | [404..3] |
|
321.0 | [0..9] | [404..3] |
|
319.0 | [0..9] | [404..3] |
|
319.0 | [0..9] | [404..3] |
Region A: Residues: [1-221] |
1 11 21 31 41 51 | | | | | | 1 MVPENRRKQL AIFVVVTYLL TFYCVYSATK TSVSFLQVTL KLNEGFNLMV LSIFILLNST 60 61 LLWQLLTKLL FGELRLIEHE HIFERLPFTI INTLFMSSLF HERYFFTVAF FGLLLLYLKV 120 121 FHWILKDRLE ALLQSINDST TMKTLIFSRF SFNLVLLAVV DYQIITRCIS SIYTNQKSDI 180 181 ESTSLYLIQV MEFTMLLIDL LNLFLQTCLN FWEFYRSQQS L |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [222-344] |
1 11 21 31 41 51 | | | | | | 1 SNENNHIVHG DPTDENTVES DQSQPVLNDD DDDDDDDRQF TGLEGKFMYE KAIDVFTRFL 60 61 KTALHLSMLI PFRMPMMLLK DVVWDILALY QSGTSLWKIW RNNKQLDDTL VTVTVEQLQN 120 121 SAN |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [345-432] |
1 11 21 31 41 51 | | | | | | 1 DDNICIICMD ELIHSPNQQT WKNKNKKPKR LPCGHILHLS CLKNWMERSQ TCPICRLPVF 60 61 DEKGNVVQTT FTSNSDITTQ TTVTDSTG |
Detection Method: | |
Confidence: | 31.232149 |
Match: | 1chcA |
Description: | STRUCTURE OF THE C3HC4 DOMAIN BY 1H-NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; A NEW STRUCTURAL CLASS OF ZINC-FINGER |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [433-551] |
1 11 21 31 41 51 | | | | | | 1 IATDQQGFAN EVDLLPTRTT SPDIRIVPTQ NIDTLAMRTR STSTPSPTWY TFPLHKTGDN 60 61 SVGSSRSAYE FLITNSDEKE NGIPVKLTIE NHEVNSLHGD GGEQIAKKIV IPDKFIQHI |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.