| Protein: | HRD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 551 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HRD1.
| Description | E-value | Query Range |
Subject Range |
|
|
325.0 | [0..9] | [404..3] |
|
|
321.0 | [0..9] | [404..3] |
|
|
321.0 | [0..9] | [404..3] |
|
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319.0 | [0..9] | [404..3] |
|
|
319.0 | [0..9] | [404..3] |
|
Region A: Residues: [1-221] |
1 11 21 31 41 51
| | | | | |
1 MVPENRRKQL AIFVVVTYLL TFYCVYSATK TSVSFLQVTL KLNEGFNLMV LSIFILLNST 60
61 LLWQLLTKLL FGELRLIEHE HIFERLPFTI INTLFMSSLF HERYFFTVAF FGLLLLYLKV 120
121 FHWILKDRLE ALLQSINDST TMKTLIFSRF SFNLVLLAVV DYQIITRCIS SIYTNQKSDI 180
181 ESTSLYLIQV MEFTMLLIDL LNLFLQTCLN FWEFYRSQQS L
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [222-344] |
1 11 21 31 41 51
| | | | | |
1 SNENNHIVHG DPTDENTVES DQSQPVLNDD DDDDDDDRQF TGLEGKFMYE KAIDVFTRFL 60
61 KTALHLSMLI PFRMPMMLLK DVVWDILALY QSGTSLWKIW RNNKQLDDTL VTVTVEQLQN 120
121 SAN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [345-432] |
1 11 21 31 41 51
| | | | | |
1 DDNICIICMD ELIHSPNQQT WKNKNKKPKR LPCGHILHLS CLKNWMERSQ TCPICRLPVF 60
61 DEKGNVVQTT FTSNSDITTQ TTVTDSTG
|
| Detection Method: | |
| Confidence: | 31.232149 |
| Match: | 1chcA |
| Description: | STRUCTURE OF THE C3HC4 DOMAIN BY 1H-NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; A NEW STRUCTURAL CLASS OF ZINC-FINGER |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [433-551] |
1 11 21 31 41 51
| | | | | |
1 IATDQQGFAN EVDLLPTRTT SPDIRIVPTQ NIDTLAMRTR STSTPSPTWY TFPLHKTGDN 60
61 SVGSSRSAYE FLITNSDEKE NGIPVKLTIE NHEVNSLHGD GGEQIAKKIV IPDKFIQHI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
