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View Structure Prediction Details

Protein: HTZ1
Organism: Saccharomyces cerevisiae
Length: 134 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HTZ1.

Description E-value Query
Range
Subject
Range
gi|7023238, gi|8... - gi|8922758|ref|NP_060737.1| H2A histone family, member J isoform 1 [Homo sapiens], gi|7023238|dbj|BA...
4.0E-45 [1..133] [1..126]
H2A4_RAT - Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2
2.0E-44 [1..133] [1..126]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
2.0E-44 [1..133] [8..133]
H2AL_STRPU - Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2
3.0E-44 [1..133] [1..126]
H2A_ONCMY - Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2
6.0E-44 [1..133] [1..126]
tr|M3X700|M3X700... - Histone H2A OS=Felis catus GN=LOC101094019 PE=3 SV=1
H2A1_MOUSE - Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE=1 SV=3
HIST1H2AE, HIST1H2AB - histone cluster 1, H2ab, histone cluster 1, H2ae
tr|G3HDU4|G3HDU4... - Histone H2A OS=Cricetulus griseus GN=I79_008699 PE=3 SV=1
gi|194039816, gi... - gi|194039816|ref|XP_001927762.1| PREDICTED: similar to histone 2a [Sus scrofa], gi|194039804|ref|XP_...
gi|109505811, gi... - gi|62663826|ref|XP_577577.1| PREDICTED: similar to histone 2a [Rattus norvegicus], ref|XP_225386.1| ...
gi|157170090, gi... - gi|187252495|gb|AAI66650.1| Histone cluster 1, H2ab [synthetic construct], gi|167774117|gb|ABZ92493....
gi|149731878 - gi|149731878|ref|XP_001497656.1| PREDICTED: similar to histone H2A [Equus caballus]
tr|G1TMN0|G1TMN0... - pep:novel chromosome:oryCun2:12:10849810:10850202:1 gene:ENSOCUG00000024086 transcript:ENSOCUT000000...
CCDS4595.1_1, CC... - null, null
gi|74004193, gi|... - gi|74004193|ref|XP_853867.1| PREDICTED: similar to Histone H2A.1 [Canis familiaris], gi|74004180|ref...
gi|114605764, gi... - gi|114605769|ref|XP_001172704.1| PREDICTED: similar to Chain K, 2.9 Angstrom X-Ray Structure Of Hybr...
ENSCJAT00000043420 - null
gi|76651181 - gi|76651181|ref|XP_875566.1| PREDICTED: similar to histone, H2A [Bos taurus]
gi|109069858, gi... - gi|109069919|ref|XP_001087578.1| PREDICTED: similar to histone 2a [Macaca mulatta], gi|109069858|ref...
6.0E-44 [1..133] [1..126]
gi|542143428|ref... - PREDICTED: histone H2A.J-like [Zonotrichia albicollis]
H2AJ_CHICK - Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1
gi|224094562 - gi|224094562|ref|XP_002193849.1| PREDICTED: similar to histone H2A [Taeniopygia guttata]
9.0E-44 [1..134] [1..127]

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Predicted Domain #1
Region A:
Residues: [1-66]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKAHGGKG KSGAKDSGSL RSQSSSARAG LQFPVGRIKR YLKRHATGRT RVGSKAAIYL  60
   61 TAVLEY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 363.201249
Match: 1f66C_
Description: Histone H2A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.581886805340955 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [67-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTAEVLELAG NAAKDLKVKR ITPRHLQLAI RGDDELDSLI RATIASGGVL PHINKALLLK  60
   61 VEKKGSKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 363.201249
Match: 1f66C_
Description: Histone H2A
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle