| Protein: | HOL1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 586 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOL1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-94 | [1..586] | [1..586] |
|
|
1.0E-79 | [3..586] | [16..586] |
|
|
6.0E-79 | [11..584] | [8..561] |
|
|
1.0E-72 | [29..537] | [4..440] |
|
|
4.0E-72 | [2..575] | [50..556] |
|
|
3.0E-70 | [2..576] | [36..552] |
|
|
4.0E-70 | [2..576] | [36..552] |
|
|
1.0E-68 | [9..546] | [2..499] |
|
Region A: Residues: [1-63] |
1 11 21 31 41 51
| | | | | |
1 MDKYTNRDHP DYIPGTFNIY SSQNLENGII YESKLKKTSS GVVLIPQPSY SPNDPLNWSS 60
61 WRK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.583 | 0.154 | transport | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.644 | 0.103 | plasma membrane | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.449 | 0.000 | mitochondrion | d.68.7 | R3H domain |
| View | Download | 0.554 | N/A | N/A | d.9.2 | Description not found. |
| View | Download | 0.522 | N/A | N/A | d.9.2 | Description not found. |
| View | Download | 0.442 | N/A | N/A | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.422 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.392 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.340 | N/A | N/A | d.68.3 | SirA-like |
| View | Download | 0.292 | N/A | N/A | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.234 | N/A | N/A | c.47.1 | Thioredoxin-like |
|
Region A: Residues: [64-505] |
1 11 21 31 41 51
| | | | | |
1 LAHFGLMAFI TAFTAATSND AGAAQDSLNE IYGISYDSMN TGAGVLFLGI GWSTLFLAPF 60
61 ANLYGRKITY IVCTTLGLFG ALWFALAKRT SDTIWSQLFV GISESCAEAQ VQLSLSDIFF 120
121 QHQLGSVLTV YIMCTSIGTF LGPLIAGYIS AFTNFRWVGW VAVIISGGLL ITIIFGCEET 180
181 YFDRGQYMTP LTSCQSGYED GTTLQNSDNT AVSRRKRHLD AKLSTPGAMG EKGVDLSETA 240
241 EFEVNNEEEV TIPETRELID GSKEHLKPYP KRVAILTKAT NLKGYGFKQY FKYLKINLRM 300
301 FLFPPVWLSG MFWGIQDVFL TFYLTTQESA YYEPPWNYSD FGVAIMNVPT LIGAVIGCIC 360
361 AGIVSDYFVL WMARHNRGIL EAEFRLYFSI ATAIIGPAGL LMFGIGTARQ WPWQAIYVGL 420
421 GFVGFAWGCS GDIAMAYLMD CY
|
| Detection Method: | |
| Confidence: | 7.39794 |
| Match: | 1lviA_ |
| Description: | No description for 1lviA_ was found. |
|
Region A: Residues: [506-586] |
1 11 21 31 41 51
| | | | | |
1 PDMVLEGMVC TAIINNTISC IFTFTCSDWL AASGTENTYI ALAVINFGIT AFALPMYYYG 60
61 KRIRLWTKRW YLQSVNLRDG V
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.607 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.480 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.453 | a.64.1 | Saposin |
| View | Download | 0.453 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.443 | a.46.1 | Methionine synthase domain |
| View | Download | 0.441 | a.112.1 | Description not found. |
| View | Download | 0.427 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.383 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.367 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.363 | b.59.1 | XRCC4, N-terminal domain |
| View | Download | 0.359 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.323 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.321 | a.22.1 | Histone-fold |
| View | Download | 0.320 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.315 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.312 | b.1.2 | Fibronectin type III |
| View | Download | 0.311 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.303 | a.4.1 | Homeodomain-like |
| View | Download | 0.301 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.300 | b.1.1 | Immunoglobulin |
| View | Download | 0.288 | a.46.1 | Methionine synthase domain |
| View | Download | 0.285 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.274 | a.22.1 | Histone-fold |
| View | Download | 0.272 | d.13.1 | HIT-like |
| View | Download | 0.272 | a.22.1 | Histone-fold |
| View | Download | 0.269 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.265 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.262 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.259 | d.68.4 | YhbY-like |
| View | Download | 0.257 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.251 | a.74.1 | Cyclin-like |
| View | Download | 0.249 | d.101.1 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
| View | Download | 0.227 | a.3.1 | Cytochrome c |
| View | Download | 0.225 | a.126.1 | Serum albumin-like |
| View | Download | 0.224 | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.222 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.215 | d.6.1 | Prion-like |
| View | Download | 0.213 | a.77.1 | DEATH domain |
| View | Download | 0.213 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.207 | d.6.1 | Prion-like |
| View | Download | 0.201 | d.110.4 | SNARE-like |
