YRC Public Data Repository - Protein Structure Prediction

Protein:	YNR021W
Organism:	Saccharomyces cerevisiae
Length:	404 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNR021W.

Description	E-value	Query Range	Subject Range
YNR021W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... YN8B_YEAST - UPF0674 endoplasmic reticulum membrane protein YNR021W OS=Saccharomyces cerevisiae (strain ATCC 2045...	0.0	[1..404]	[1..404]
gi\|114669888, gi... - gi\|114669890\|ref\|XP_001150616.1\| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes], gi\|114... gi\|124000127 - gi\|124000127\|gb\|ABM87572.1\| coiled-coil domain containing 47 [synthetic construct] CCDC47 - coiled-coil domain containing 47	0.0	[18..387]	[112..467]
CCD47_MOUSE - Coiled-coil domain-containing protein 47 OS=Mus musculus GN=Ccdc47 PE=1 SV=2	0.0	[18..387]	[112..467]
gi\|220952076 - gi\|220952076\|gb\|ACL88581.1\| CG17593-PA [synthetic construct] CG17593-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG17593 (CG17593, FBgn0031544). It is a prote...	1.0E-99	[19..398]	[124..474]
ccdc-47 - status:Confirmed UniProt:Q23382 protein_id:CAA84678.1	2.0E-93	[21..398]	[83..442]
gi\|8777425 - gi\|8777425\|dbj\|BAA97015.1\| unnamed protein product [Arabidopsis thaliana]	4.0E-91	[30..393]	[342..679]

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Predicted Domain #1

Region A:
Residues: [1-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSIFGPLT GFLERVNSLN APYQALSYDE QKAMTIWQRV KFYNWTFELC ALGVLFLVYA  60
   61 FYKFGNSVNL KRGNQIFQSL HSFLANDLKF SRVGFNINDS KIFTVEHQNT WFSSFATGRS 120
  121 AIKSINLNLH LVARSNPFSM CLEYLLGFFF ASLKSKQLEE FMEIVIRPNG ILVTSESAHP 180
  181 NKNAHEILTK FRFVTSIVNK EFMNQARTEN YFLSIAHTSE NDKLPNNFVY MSDVNQLSGF 240
  241 MFHYSKPYEV LSQAGNLLKY ISFTDLPVNP PRDDKEWESS IEPKAIIRCA VPQNENELKL 300
  301 LNQIISLVVE IYDGFTQDLV QQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [323-404]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPNLFITNDI LKRTTNLRQQ ELNKIKKFMK ETELELAKEK KLELEKAKRR QLKASGQQEK  60
   61 VDQKMKEKRE RRLKNKQRTR FQ