YRC Public Data Repository - Protein Structure Prediction

Protein:	ATG3
Organism:	Saccharomyces cerevisiae
Length:	310 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG3.

Description	E-value	Query Range	Subject Range
gi\|190408992 - gi\|190408992\|gb\|EDV12257.1\| hypothetical protein SCRG_03135 [Saccharomyces cerevisiae RM11-1a] gi\|207341599 - gi\|207341599\|gb\|EDZ69608.1\| YNR007Cp-like protein [Saccharomyces cerevisiae AWRI1631] ATG3 - E2-like enzyme involved in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; plays a r... ATG3_YEAS7 - Autophagy-related protein 3 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG3 PE=3 SV=1 ATG3_YEAST - Autophagy-related protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG3 PE=1 SV...	0.0	[1..310]	[1..310]
gi\|19705511, gi\|... - gi\|9957034\|gb\|AAG09182.1\|AF175224_1 preconditioning-inducible gene 1 protein [Rattus norvegicus], gi...	0.0	[2..306]	[8..309]
gi\|220944316, gi... - gi\|220954176\|gb\|ACL89631.1\| Aut1-PA [synthetic construct], gi\|220944316\|gb\|ACL84701.1\| Aut1-PA [synt... Aut1-PA - The gene Aut1 is referred to in FlyBase by the symbol Dmel\Aut1 (CG6877, FBgn0036813). It is a prote...	0.0	[2..306]	[8..324]
ATG3_MOUSE - Ubiquitin-like-conjugating enzyme ATG3 OS=Mus musculus GN=Atg3 PE=1 SV=1	0.0	[2..306]	[8..309]
gi\|114588462 - gi\|114588462\|ref\|XP_001155234.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] gi\|124000529, gi... - gi\|124000529\|gb\|ABM87773.1\| ATG3 autophagy related 3 homolog (S. cerevisiae) [synthetic construct], ... ATG3 - ATG3 autophagy related 3 homolog (S. cerevisiae)	1.0E-99	[2..306]	[8..309]
gi\|9758466 - gi\|9758466\|dbj\|BAB08995.1\| autophagocytosis protein AUT1-like [Arabidopsis thaliana]	1.0E-92	[11..308]	[16..305]
atg-3 - status:Confirmed UniProt:Q9N369 protein_id:AAF60797.1	3.0E-92	[2..306]	[8..300]
apg3 - autophagy associated protein Apg3 ATG3_SCHPO - Autophagy-related protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atg3 PE=3 SV=1	1.0E-88	[2..308]	[5..274]
gi\|31433503, gi\|... - gi\|37536838\|ref\|NP_922721.1\| autophagocytosis protein AUT1-like [Oryza sativa (japonica cultivar-gro...	8.0E-63	[11..212]	[16..240]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSTLSSWR EYLTPITHKS TFLTTGQITP EEFVQAGDYL CHMFPTWKWN EESSDISYRD  60
   61 FLPKNKQFLI IRKVPCDKRA EQCVEVEGPD VIMKGFAEDG DEDDVLEYIG SETEHVQSTP 120
  121 AGGTKDSSID DIDELIQDME I

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [142-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEEDENDDTE EFNAKGGLAK DMAQERYYDL YIAYSTSYRV PKMYIVGFNS NGSPLSPEQM  60
   61 FEDISADYRT KTATIEKLPF YKNSVLSVSI HPCKHANVMK ILLDKVRVVR QRRRKELQEE 120
  121 QELDGVGDWE DLQDDIDDSL RVDQYLIVFL KFITSVTPSI QHDYTMEGW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits