| Protein: | VPS27 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 622 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS27.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..622] | [1..622] |
|
|
0.0 | [1..556] | [1..559] |
|
|
0.0 | [1..556] | [1..559] |
|
|
0.0 | [1..556] | [1..561] |
|
|
8.0E-84 | [5..434] | [7..453] |
|
|
1.0E-66 | [163..517] | [418..785] |
|
|
2.0E-65 | [140..558] | [1503..1889] |
|
|
7.0E-61 | [136..556] | [15..418] |
|
Region A: Residues: [1-146] |
1 11 21 31 41 51
| | | | | |
1 MSVSTPSELD ALIEQATSES IPNGDLDLPI ALEISDVLRS RRVNPKDSMR CIKKRILNTA 60
61 DNPNTQLSSW KLTNICVKNG GTPFIKEICS REFMDTMEHV ILREDSNEEL SELVKTILYE 120
121 LYVAFKNDSQ LNYVAKVYDK LISRGI
|
| Detection Method: |  |
| Confidence: | 9.55 |
| Match: | 1hf8A |
| Description: | Clathrin assembly lymphoid myeloid leukaemia protein, Calm |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 0.107173543930241 | bayes_pls_golite062009 |
|
Region A: Residues: [147-243] |
1 11 21 31 41 51
| | | | | |
1 KFPEKLTLSN SPTAMFDSKT PADWIDSDAC MICSKKFSLL NRKHHCRSCG GVFCQEHSSN 60
61 SIPLPDLGIY EPVRVCDSCF EDYDLKRHDD SKKSKKH
|
| Detection Method: | |
| Confidence: | 401.69897 |
| Match: | 1vfyA_ |
| Description: | vps27p protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [244-356] |
1 11 21 31 41 51
| | | | | |
1 RHKRKKDRDY STPEDEEELI RKAIELSLKE SRNSASSEPI VPVVESKNEV KRQEIEEEED 60
61 PDLKAAIQES LREAEEAKLR SERQKASRQM QPQQPSPQPQ PIHSVDLSDE EKD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.364 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.231 | a.11.2 | Second domain of FERM |
| View | Download | 0.277 | a.24.4 | Hemerythrin |
| View | Download | 0.220 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.251 | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.220 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.203 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
|
Region A: Residues: [357-622] |
1 11 21 31 41 51
| | | | | |
1 SIYMFASLVE KMKSRPLNEI LEDSKLQNLA QRVFASKARL NYALNDKAQK YNTLIEMNGK 60
61 ISEIMNIYDR LLEQQLQSIN LSQQYTLPQV PSDPYNYLTE NVQNPAESYQ TPPLQQLSSH 120
121 QYKPQQDVSR QQSVKANSSP TTNIDHLKTI DVTPHAQQKP QSHVELAPSD PPYPKEEAED 180
181 EGTQAVQDEE SSTQESRERP YPVETENGET SINKRPQGIT RYDFPTVPAR KFVQPESTVP 240
241 LPASSSEIPI KEERPPSPQE ELLIEL
|
| Detection Method: | |
| Confidence: | 14.12 |
| Match: | 1ldvA |
| Description: | No description for 1ldvA was found. |
