| Protein: | LEM3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 414 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEM3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..414] | [1..414] |
|
|
0.0 | [44..413] | [9..367] |
|
|
0.0 | [42..413] | [17..344] |
|
|
0.0 | [50..412] | [25..402] |
|
|
0.0 | [42..397] | [2..332] |
|
Region A: Residues: [1-78] |
1 11 21 31 41 51
| | | | | |
1 MVNFDLGQVG EVFRRKDKGA IVSGDNPEEE EDVDASEFEE DEVKPVRTKN RRPKEDAFTQ 60
61 QRLAAINPVL TPRTVLPL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [79-414] |
1 11 21 31 41 51
| | | | | |
1 YLLIAVVFVI VGGCILAQNS KVDEVTIYYQ DCMTNATSSW SDIPSEHWQF VFHKYKTYNT 60
61 APQWRFVDDE SDDFTKQRGT CQIRFTTPSD MKNNVYLNYV LEKFAANHRR YVLSFSEDQI 120
121 RGEDASYETV HDATGINCKP LSKNADGKIY YPCGLIANSM FNDTFPLQLT NVGDTSNNYS 180
181 LTNKGINWES DKKRYKKTKY NYTQIAPPPY WEKMYPDGYN ETNIPDIQDW EEFQNWMRPG 240
241 AFDKITKLIR INKNDTLPAG EYQLDIGLHW PVLEFNGKKG IYLTHGSHLG GRNPFLGIVY 300
301 LIGGCICAAM ALILLTFWLF GGRKIADASS LSWNMK
|
| Detection Method: | |
| Confidence: | 198.0 |
| Match: | PF03381 |
| Description: | LEM3 (ligand-effect modulator 3) family / CDC50 family |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
