| Protein: | LEM3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 414 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEM3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..414] | [1..414] |
|
|
0.0 | [44..413] | [9..367] |
|
|
0.0 | [42..413] | [17..344] |
|
|
0.0 | [50..412] | [25..402] |
|
|
0.0 | [42..397] | [2..332] |
|
Region A: Residues: [1-78] |
1 11 21 31 41 51
| | | | | |
1 MVNFDLGQVG EVFRRKDKGA IVSGDNPEEE EDVDASEFEE DEVKPVRTKN RRPKEDAFTQ 60
61 QRLAAINPVL TPRTVLPL
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.274 | a.4.1 | Homeodomain-like |
| View | Download | 0.214 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.303 | d.58.12 | eEF-1beta-like |
| View | Download | 0.245 | a.101.1 | Uteroglobin-like |
| View | Download | 0.244 | d.58.49 | YajQ-like |
| View | Download | 0.213 | a.39.1 | EF-hand |
| View | Download | 0.207 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [79-414] |
1 11 21 31 41 51
| | | | | |
1 YLLIAVVFVI VGGCILAQNS KVDEVTIYYQ DCMTNATSSW SDIPSEHWQF VFHKYKTYNT 60
61 APQWRFVDDE SDDFTKQRGT CQIRFTTPSD MKNNVYLNYV LEKFAANHRR YVLSFSEDQI 120
121 RGEDASYETV HDATGINCKP LSKNADGKIY YPCGLIANSM FNDTFPLQLT NVGDTSNNYS 180
181 LTNKGINWES DKKRYKKTKY NYTQIAPPPY WEKMYPDGYN ETNIPDIQDW EEFQNWMRPG 240
241 AFDKITKLIR INKNDTLPAG EYQLDIGLHW PVLEFNGKKG IYLTHGSHLG GRNPFLGIVY 300
301 LIGGCICAAM ALILLTFWLF GGRKIADASS LSWNMK
|
| Detection Method: | |
| Confidence: | 198.0 |
| Match: | PF03381 |
| Description: | LEM3 (ligand-effect modulator 3) family / CDC50 family |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
