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View Structure Prediction Details

Protein: CAF40
Organism: Saccharomyces cerevisiae
Length: 373 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAF40.

Description E-value Query
Range
Subject
Range
gi|74005731 - gi|74005731|ref|XP_853052.1| PREDICTED: similar to rcd1 (required for cell differentiation) homolog ...
522.0 [0..39] [370..92]
RCD1_MACFA - Cell differentiation protein RCD1 homolog OS=Macaca fascicularis GN=RQCD1 PE=2 SV=1
gi|194211312 - gi|194211312|ref|XP_001491581.2| PREDICTED: similar to RCD1 required for cell differentiation1 homol...
RCD1_RAT - Cell differentiation protein RCD1 homolog OS=Rattus norvegicus GN=Rqcd1 PE=1 SV=1
RCD1_MOUSE - Cell differentiation protein RCD1 homolog OS=Mus musculus GN=Rqcd1 PE=1 SV=1
gi|126337826 - gi|126337826|ref|XP_001363406.1| PREDICTED: hypothetical protein [Monodelphis domestica]
ENSOCUP000000168... - pep:novel chromosome:oryCun2:7:159854153:159878047:1 gene:ENSOCUG00000001981 transcript:ENSOCUT00000...
ENSCJAT00000021641 - null
tr|G3HWH2|G3HWH2... - Cell differentiation protein RCD1-like OS=Cricetulus griseus GN=I79_015330 PE=4 SV=1
RCD1_BOVIN - Cell differentiation protein RCD1 homolog OS=Bos taurus GN=RQCD1 PE=2 SV=1
511.0 [0..97] [370..13]
RCD1_XENLA - Cell differentiation protein RCD1 homolog OS=Xenopus laevis GN=rqcd1 PE=2 SV=1
RCD1_XENTR - Cell differentiation protein RCD1 homolog OS=Xenopus tropicalis GN=rqcd1 PE=2 SV=1
511.0 [0..97] [370..13]
gi|114583332 - gi|114583332|ref|XP_001157955.1| PREDICTED: RCD1 required for cell differentiation1 homolog [Pan tro...
RCD1_PONAB - Cell differentiation protein RCD1 homolog OS=Pongo abelii GN=RQCD1 PE=2 SV=2
RQCD1 - RCD1 required for cell differentiation1 homolog (S. pombe)
510.0 [0..98] [370..14]
gi|47226808 - gi|47226808|emb|CAG06650.1| unnamed protein product [Tetraodon nigroviridis]
507.0 [0..97] [370..11]
gi|197097646 - gi|197097646|ref|NP_001126453.1| RCD1 required for cell differentiation1 homolog [Pongo abelii]
gi|55731505 - gi|55731505|emb|CAH92464.1| hypothetical protein [Pongo abelii]
507.0 [0..98] [370..14]
gi|20258840, gi|... - gi|21689729|gb|AAM67486.1| putative cell differentiation protein [Arabidopsis thaliana], gi|20258840...
505.0 [0..32] [368..1]
RCD1_DANRE - Cell differentiation protein RCD1 homolog OS=Danio rerio GN=rqcd1 PE=2 SV=1
499.0 [0..98] [370..13]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSAQKPIYG NGAGVNMGGG GPSTNNPGSM SMPGVPTSMG PGMNQQIPSG GPMLMGNTPN  60
   61 NNNSNENGEN NGNNGN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGGNDANATR NNPNMVNNRG AVHALDDPNV YHWICQLTYG PQKEQALLEL GRKREQFDDL  60
   61 AVVLWSSFGV MTSLLNEIIS VYPMLQPQML SNNLSNRVCN ALVLLQCVAS HPETKHLFLQ 120
  121 AHIPLFLFPF LNTTSRQRTF EYLRLTSLGV IGALVKNDSQ DVITFLLRTD IVPLCLRIME 180
  181 SSSELSKTVA IFILQKILLD DVG

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 8.35
Match:
Description: No description for 1ee5A was found.

Predicted Domain #3
Region A:
Residues: [280-373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQYICATLER FYAVTNVLKD MVEHLTVSTP PGRLLKHIIR CYLRLSDDLE ARRLLKIVLP  60
   61 AKLRDNTFTE VLRDDVGSKR CLAQLLLTLN EETS

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 8.35
Match:
Description: No description for 1ee5A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle