YRC Public Data Repository - Protein Structure Prediction

Protein:	CAF40
Organism:	Saccharomyces cerevisiae
Length:	373 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAF40.

Description	E-value	Query Range	Subject Range
gi\|74005731 - gi\|74005731\|ref\|XP_853052.1\| PREDICTED: similar to rcd1 (required for cell differentiation) homolog ...	522.0	[0..39]	[370..92]
RCD1_MACFA - Cell differentiation protein RCD1 homolog OS=Macaca fascicularis GN=RQCD1 PE=2 SV=1 gi\|194211312 - gi\|194211312\|ref\|XP_001491581.2\| PREDICTED: similar to RCD1 required for cell differentiation1 homol... RCD1_RAT - Cell differentiation protein RCD1 homolog OS=Rattus norvegicus GN=Rqcd1 PE=1 SV=1 RCD1_MOUSE - Cell differentiation protein RCD1 homolog OS=Mus musculus GN=Rqcd1 PE=1 SV=1 gi\|126337826 - gi\|126337826\|ref\|XP_001363406.1\| PREDICTED: hypothetical protein [Monodelphis domestica] ENSOCUP000000168... - pep:novel chromosome:oryCun2:7:159854153:159878047:1 gene:ENSOCUG00000001981 transcript:ENSOCUT00000... ENSCJAT00000021641 - null tr\|G3HWH2\|G3HWH2... - Cell differentiation protein RCD1-like OS=Cricetulus griseus GN=I79_015330 PE=4 SV=1 RCD1_BOVIN - Cell differentiation protein RCD1 homolog OS=Bos taurus GN=RQCD1 PE=2 SV=1	511.0	[0..97]	[370..13]
RCD1_XENLA - Cell differentiation protein RCD1 homolog OS=Xenopus laevis GN=rqcd1 PE=2 SV=1 RCD1_XENTR - Cell differentiation protein RCD1 homolog OS=Xenopus tropicalis GN=rqcd1 PE=2 SV=1	511.0	[0..97]	[370..13]
gi\|114583332 - gi\|114583332\|ref\|XP_001157955.1\| PREDICTED: RCD1 required for cell differentiation1 homolog [Pan tro... RCD1_PONAB - Cell differentiation protein RCD1 homolog OS=Pongo abelii GN=RQCD1 PE=2 SV=2 RQCD1 - RCD1 required for cell differentiation1 homolog (S. pombe)	510.0	[0..98]	[370..14]
gi\|47226808 - gi\|47226808\|emb\|CAG06650.1\| unnamed protein product [Tetraodon nigroviridis]	507.0	[0..97]	[370..11]
gi\|197097646 - gi\|197097646\|ref\|NP_001126453.1\| RCD1 required for cell differentiation1 homolog [Pongo abelii] gi\|55731505 - gi\|55731505\|emb\|CAH92464.1\| hypothetical protein [Pongo abelii]	507.0	[0..98]	[370..14]
gi\|20258840, gi\|... - gi\|21689729\|gb\|AAM67486.1\| putative cell differentiation protein [Arabidopsis thaliana], gi\|20258840...	505.0	[0..32]	[368..1]
RCD1_DANRE - Cell differentiation protein RCD1 homolog OS=Danio rerio GN=rqcd1 PE=2 SV=1	499.0	[0..98]	[370..13]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSAQKPIYG NGAGVNMGGG GPSTNNPGSM SMPGVPTSMG PGMNQQIPSG GPMLMGNTPN  60
   61 NNNSNENGEN NGNNGN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [77-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGGNDANATR NNPNMVNNRG AVHALDDPNV YHWICQLTYG PQKEQALLEL GRKREQFDDL  60
   61 AVVLWSSFGV MTSLLNEIIS VYPMLQPQML SNNLSNRVCN ALVLLQCVAS HPETKHLFLQ 120
  121 AHIPLFLFPF LNTTSRQRTF EYLRLTSLGV IGALVKNDSQ DVITFLLRTD IVPLCLRIME 180
  181 SSSELSKTVA IFILQKILLD DVG

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.35
Match:
Description:	No description for 1ee5A was found.

Predicted Domain #3

Region A:
Residues: [280-373]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQYICATLER FYAVTNVLKD MVEHLTVSTP PGRLLKHIIR CYLRLSDDLE ARRLLKIVLP  60
   61 AKLRDNTFTE VLRDDVGSKR CLAQLLLTLN EETS

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.35
Match:
Description:	No description for 1ee5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits